View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11640_high_3 (Length: 757)

Name: NF11640_high_3
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11640_high_3
NF11640_high_3
[»] chr5 (8 HSPs)
chr5 (223-563)||(24538561-24538897)
chr5 (71-223)||(25561122-25561275)
chr5 (223-386)||(29719298-29719459)
chr5 (71-218)||(36193744-36193891)
chr5 (79-223)||(8317330-8317474)
chr5 (79-218)||(33699983-33700122)
chr5 (639-680)||(24538333-24538374)
chr5 (677-727)||(24538268-24538318)
[»] chr6 (7 HSPs)
chr6 (71-225)||(6266427-6266580)
chr6 (79-198)||(9961154-9961273)
chr6 (86-218)||(34576163-34576295)
chr6 (79-197)||(29396470-29396588)
chr6 (79-196)||(33029650-33029767)
chr6 (79-150)||(22996045-22996116)
chr6 (79-150)||(23792284-23792355)
[»] chr4 (6 HSPs)
chr4 (67-232)||(2933546-2933711)
chr4 (71-224)||(4734115-4734268)
chr4 (71-223)||(12842278-12842431)
chr4 (84-206)||(4641614-4641737)
chr4 (79-199)||(42989757-42989875)
chr4 (127-198)||(45283137-45283208)
[»] chr8 (8 HSPs)
chr8 (71-223)||(32826586-32826738)
chr8 (79-223)||(43899007-43899152)
chr8 (84-223)||(39823349-39823488)
chr8 (79-224)||(10335370-10335515)
chr8 (79-222)||(11796571-11796706)
chr8 (112-223)||(36019613-36019724)
chr8 (79-172)||(28321019-28321112)
chr8 (459-509)||(8735260-8735310)
[»] chr1 (7 HSPs)
chr1 (79-222)||(9245797-9245940)
chr1 (79-206)||(26028978-26029105)
chr1 (105-221)||(49775688-49775804)
chr1 (77-223)||(47030434-47030580)
chr1 (79-201)||(30057576-30057697)
chr1 (79-227)||(6797411-6797558)
chr1 (79-218)||(1141472-1141610)
[»] chr7 (6 HSPs)
chr7 (118-222)||(43202343-43202447)
chr7 (71-222)||(46205831-46205982)
chr7 (79-225)||(37961517-37961663)
chr7 (79-218)||(22609805-22609944)
chr7 (79-223)||(29772344-29772487)
chr7 (133-219)||(6728827-6728911)
[»] chr3 (6 HSPs)
chr3 (79-226)||(38360180-38360327)
chr3 (79-219)||(54383672-54383812)
chr3 (72-174)||(8913903-8914006)
chr3 (106-222)||(26813969-26814085)
chr3 (120-222)||(17071865-17071967)
chr3 (127-218)||(41410547-41410638)
[»] chr2 (3 HSPs)
chr2 (119-222)||(24441951-24442054)
chr2 (79-206)||(40611581-40611708)
chr2 (79-218)||(33425109-33425247)
[»] scaffold0227 (1 HSPs)
scaffold0227 (79-221)||(5051-5193)
[»] scaffold0063 (1 HSPs)
scaffold0063 (79-222)||(35769-35910)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 223 - 563
Target Start/End: Complemental strand, 24538897 - 24538561
Alignment:
Q  223 taaaatgtcttagctaaatccaatcaaatgcggcgacaacacatgccaagtggggtgtg--gagatggaagaaactat-gtgaggagactcaaatgcaat 319  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||||||||||||||||||    
T  24538897 taaaatgtcttagctacatccaatcaaatgcggcgacaacacatgccaagtggggggtgtcgagatggaagaaactatagtgaggagactcaaatgcaat 24538798  T
Q  320 ataaatgtgtcgttttcatctacccacgacaaggtgagaagtgagatgtgtatacgggatgatatagacttacaa-aaaatatgtggttttcgccgcgtt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||            
T  24538797 ataaatgtgtcgttttcatctacccacgacaaggtgagaagtgagatgtgtatacgggatgatataggcttacaaaaaaatatgtggttttc-------- 24538706  T
Q  419 ggacctttatcacgatattgtgtgaatcaatgaactagaattagtgaatgttgagtttgaaattgattcgaagaaagtcattgattattttgagaggtag 518  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  24538705 cgacctttatcacgatattgtgtgaatcaatgaactagaattagtgaatgttaagtttgaagttgattcgaagaaagtcattgattattttgagaggtag 24538606  T
Q  519 cggtgatatcacagaatttagggtcagtatgaatgcttgtatttt 563  Q
    ||||||||||||| ||||||||| || |||| |||||||||||||    
T  24538605 cggtgatatcacaaaatttagggccattatggatgcttgtatttt 24538561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 25561275 - 25561122
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaa-aa 169  Q
    ||||||| |||||||| |||| ||||||||| | |||||| ||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||| ||    
T  25561275 gagcaatgttatttgtgcaactaaaattgaataacttatgcaacaatctttaatatcgtgaggagcatgcaaatcgaaatcactaaaagaatattaaaaa 25561176  T
Q  170 aatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25561175 aatagcaaaatagttgttggttgtacaaaaataatgtcaatatatcattcctct 25561122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 223 - 386
Target Start/End: Original strand, 29719298 - 29719459
Alignment:
Q  223 taaaatgtcttagctaaatccaatcaaatgcggcgacaacacatgccaagtggggtgtggagatggaagaaactat-gtgaggagactcaaatgcaatat 321  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||   |||  ||||||||||| | || || |||||||||||||||||||     
T  29719298 taaaatgccttagctacatccaatcaaatgcggcgacaacacatgccaagtg---tgtctagatggaagaaccaatagtaaggagactcaaatgcaataa 29719394  T
Q  322 aaatgtgtcgttttcatctacccacgacaaggtgagaagtgagatgtgtatacgggatgatatag 386  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  29719395 aaatgtgtcgttttcatctacccgcgacaagatgagaactgagatgtgtatacgggatgatatag 29719459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 36193891 - 36193744
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaa 170  Q
    ||||||| |||| ||||||| |||||||||||| || ||| |||| | ||||||||||||| |||||||||||||||||| ||||||| ||||||| |||    
T  36193891 gagcaatgttatatgtacaatcaaaattgaacaactaatgcaacaccttttaatattgtgaagagcacgcaaatcgaaatcactaaaaaaatattataaa 36193792  T
Q  171 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    |||||||||  |||||||||||||||||||||||||  ||||||||||    
T  36193791 atagcaaaaaggttgttggttgtacaaaaatgatgttcatatatcatt 36193744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 8317330 - 8317474
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||||||||||  | | |||||| ||||| |||| | | ||||||||||||||||||| |||| | |||||  ||||||||||||||||||    
T  8317330 ttatttgtacaaccaaaattataaaacttatgcaacaatctttgacaatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaaatagcaaa 8317429  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
    | ||||||||||||||||||||||||||  | |||||||||||||    
T  8317430 aaagttgttggttgtacaaaaatgatgttcaaatatcattcctct 8317474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 33699983 - 33700122
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||||||| || ||| |||| ||||| ||| |||||| |||||||||||| |||| | |||||  |||||||||||| |||||    
T  33699983 ttatatgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatattaaaaaattgcaaa 33700082  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    | ||||||||||||||| ||||||||||  ||||||||||    
T  33700083 agagttgttggttgtaccaaaatgatgttcatatatcatt 33700122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 639 - 680
Target Start/End: Complemental strand, 24538374 - 24538333
Alignment:
Q  639 cattttgatttattcattagcttcaatgatgtgtgaaggaca 680  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24538374 cattttgatttattcattagcttcaatgatgtgtgaaggaca 24538333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 677 - 727
Target Start/End: Complemental strand, 24538318 - 24538268
Alignment:
Q  677 gacaatggataataaccctaacgagtctaaagaccaaagactcaactaaaa 727  Q
    ||||||||||||||||||||| || ||||||||| |||||| |||||||||    
T  24538318 gacaatggataataaccctaatgaatctaaagactaaagacccaactaaaa 24538268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 6266427 - 6266580
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaa 170  Q
    ||||||| ||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  6266427 gagcaatgttatttgtacaactaaaattgaacaacttatacaacaacctttaatattgtgaggagcacgcaaatcgaaatcactaaaaaaatattaaaaa 6266526  T
Q  171 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctctaa 225  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6266527 atagcaaaatagttgttggttgt-caaaaatgatgtcaatatatcattcctctaa 6266580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 9961154 - 9961273
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||| |||||||||||  | |||||||| | | ||| |||||||| |||||| |||||||||| | | ||| |||||||||||||||||||    
T  9961154 ttatttgtacaactaaaattgaacaattaatgtaacaccatataacattgtgagaagcacgtaaatcgaaatcaatcaaaaaatattaaaaaatagcaaa 9961253  T
Q  179 atagttgttggttgtacaaa 198  Q
      ||||||||||||||||||    
T  9961254 taagttgttggttgtacaaa 9961273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 34576163 - 34576295
Alignment:
Q  86 tacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttg 185  Q
    ||||| |||||||||||| || ||| |||| | ||| ||| |||||| |||||||||||| |||| | |||||  |||||||||||| |||||| |||||    
T  34576163 tacaatcaaaattgaacaactaatgcaacaccttttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatattaaaaaattgcaaaagagttg 34576262  T
Q  186 ttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    || ||||||  ||||||||||  ||||||||||    
T  34576263 ttagttgtatcaaaatgatgttcatatatcatt 34576295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 29396588 - 29396470
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||| | ||||||| ||| |  ||| ||||||||||||  |||||||||||||  |||||||||| | | |||  ||  | ||||||||||||    
T  29396588 ttatttgtacatctaaaattggacaaccaatgcaacaacctttaactttgtgaggagcacaaaaatcgaaatcaatcaaaatatcattaaaaatagcaaa 29396489  T
Q  179 atagttgttggttgtacaa 197  Q
      |||||||||||||||||    
T  29396488 taagttgttggttgtacaa 29396470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 33029767 - 33029650
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||||| |||||||||||||| ||| || | | |||| | | ||| ||||||| ||||| | |||||||||| | | ||| |||||||||| |||||| |    
T  33029767 ttatttatacaaccaaaattggacaactaacgcaacaccatataacattgtgatgagcatgtaaatcgaaatcaatcaaaaaatattaaaacatagcaga 33029668  T
Q  179 atagttgttggttgtaca 196  Q
      ||||||||||||||||    
T  33029667 taagttgttggttgtaca 33029650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 22996116 - 22996045
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaat 150  Q
    ||||||||||| | ||||||| ||| |  ||||||||||||||||  |||||||||||||  ||||||||||    
T  22996116 ttatttgtacatctaaaattggacaaccaatgtaacaacctttaactttgtgaggagcacataaatcgaaat 22996045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 23792284 - 23792355
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaat 150  Q
    ||||||||||| | ||||||| ||| |  ||||||||||||||||  |||||||||||||  ||||||||||    
T  23792284 ttatttgtacatctaaaattggacaaccaatgtaacaacctttaactttgtgaggagcacataaatcgaaat 23792355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 8e-60; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 67 - 232
Target Start/End: Complemental strand, 2933711 - 2933546
Alignment:
Q  67 tgtcgagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatatta 166  Q
    ||||||||||| ||||||||||||||||||||||||| || |||||||||  |||||||||||||||||| |||||||| |||| ||||||| |||||||    
T  2933711 tgtcgagcaatgttatttgtacaaccaaaattgaacaactaatgtaacaatttttaatattgtgaggagcgcgcaaatcaaaatcactaaaaaaatatta 2933612  T
Q  167 aaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctctaaaatgtct 232  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  2933611 aaaaatagtaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctcaaatatgtct 2933546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 4734115 - 4734268
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaa 170  Q
    ||||||| ||||||||| || ||||||||||||  ||||| |||||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  4734115 gagcaatgttatttgtataatcaaaattgaacaatttatgcaacaacttttaatattgtgaggagcacgccaatcaaaatcactaaaagaatattaaaaa 4734214  T
Q  171 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctcta 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4734215 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctcta 4734268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 12842431 - 12842278
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaa-tattaaaa 169  Q
    ||||||| |||||||||||||||||||| |||| || ||  ||||||||||||||||||||||| || ||||||| |||| ||||||| || ||||||||    
T  12842431 gagcaatgttatttgtacaaccaaaattcaacaactaatacaacaacctttaatattgtgaggaacatgcaaatcaaaatcactaaaaaaaatattaaaa 12842332  T
Q  170 aatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
    |||||||||  ||||||||||||||||||||||||||  |||||||||||||||    
T  12842331 aatagcaaagaagttgttggttgtacaaaaatgatgttcatatatcattcctct 12842278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 4641614 - 4641737
Alignment:
Q  84 tgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaa-tattaaaaaatagcaaaatag 182  Q
    |||||||||||||||| | |  ||||| |||||||||| | |||||||| |||||||||||  |||| | ||||| || ||||||||||| |||||  ||    
T  4641614 tgtacaaccaaaattggataatttatgcaacaacctttgacattgtgagaagcacgcaaattaaaatcaataaaaaaagtattaaaaaattgcaaagaag 4641713  T
Q  183 ttgttggttgtacaaaaatgatgt 206  Q
    ||||||||||||||||||| ||||    
T  4641714 ttgttggttgtacaaaaattatgt 4641737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 42989757 - 42989875
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||||||||||||||| || ||| ||||  || ||||||||||| ||||| ||||||| |||  | || || |||||| ||||||||||||    
T  42989757 ttatttgtacaaccaaaattgaacaactaatgcaaca--ctataatattgtgaagagcaagcaaatcaaaagcagtacaaaaatatt-aaaaatagcaaa 42989853  T
Q  179 atagttgtt-ggttgtacaaaa 199  Q
      ||||||| ||||||||||||    
T  42989854 taagttgttaggttgtacaaaa 42989875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 45283137 - 45283208
Alignment:
Q  127 tgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaa 198  Q
    ||||||||| | |||||||||||| | ||||| ||||||||||||||| |||  ||||| ||||| ||||||    
T  45283137 tgtgaggagtatgcaaatcgaaatcaataaaaaaatattaaaaaatagaaaataagttgctggttttacaaa 45283208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 2e-54; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 32826586 - 32826738
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaa 170  Q
    ||||||| ||||||||||||| ||||||||||| |||| | ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  32826586 gagcaatgttatttgtacaactaaaattgaacaacttaggcaacaaactttaatattgtgaggaacacgcaaatcgaaatcactaaaagaatattaaaaa 32826685  T
Q  171 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
    |||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  32826686 ataataaaatagttgttggttttacaaaaatgatgtcaatatatcattcctct 32826738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 43899152 - 43899007
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaat-aactaaaagaatattaaaaaatagcaa 177  Q
    ||||||||||||||||||||||||| || ||| |||| ||||||||| ||| ||||||||||||||| |||| ||  |||| ||||||||||||||||||    
T  43899152 ttatttgtacaaccaaaattgaacaactaatgcaacaccctttaatactgtaaggagcacgcaaatcaaaatcaataaaaaaaatattaaaaaatagcaa 43899053  T
Q  178 aatagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
    |  |||||||||||||||| |||| || |  |||||||||||||||    
T  43899052 agaagttgttggttgtacacaaataatattcatatatcattcctct 43899007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 39823488 - 39823349
Alignment:
Q  84 tgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagt 183  Q
    |||||||||||||||||||| || ||| |||| ||||| ||| |||||| ||||||||||||||||| | |||||  | |||||||||| |||||| |||    
T  39823488 tgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcgaaatcattaaaaatagattaaaaaattgcaaaagagt 39823389  T
Q  184 tgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
    |||||||||||  ||||||||||  |||||||||| ||||    
T  39823388 tgttggttgtatcaaaatgatgttcatatatcattactct 39823349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 79 - 224
Target Start/End: Original strand, 10335370 - 10335515
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||||||| || ||| ||||  |||| ||| |||||| ||||||||||||||||| | |||||  | |||||||||| |||||    
T  10335370 ttatatgtacaaccaaaattgaacaactaatgcaacactctttgataatgtgagaagcacgcaaatcgaaatcattaaaaatagattaaaaaattgcaaa 10335469  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctcta 224  Q
    | ||||||||||||||  ||||||||||  |||||||||| |||||    
T  10335470 agagttgttggttgtatcaaaatgatgttcatatatcattactcta 10335515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 11796706 - 11796571
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||||||||||| ||| |||||| ||||||     | | ||||||||||||||||||| |||| | |||||  ||||||||||   |||||    
T  11796706 ttatttgtacaaccaaaattgtacaacttatgcaacaac-----acaatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaa---gcaaa 11796615  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctc 222  Q
    | ||||||||||||||||||||||||||  | ||||||||||||    
T  11796614 aaagttgttggttgtacaaaaatgatgttcaaatatcattcctc 11796571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 36019613 - 36019724
Alignment:
Q  112 aacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaata 211  Q
    |||| ||| |||||||||||||||||||||||||||||  | | ||| ||||||||||| |||||||  |||||||||||||||| ||| |||||  | |    
T  36019613 aacaccctataatattgtgaggagcacgcaaatcgaaagtagtcaaaaaatattaaaaagtagcaaataagttgttggttgtacacaaaagatgttcaca 36019712  T
Q  212 tatcattcctct 223  Q
    | ||||||||||    
T  36019713 tgtcattcctct 36019724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 28321019 - 28321112
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaat 172  Q
    |||| |||||||  ||||||| ||| |||||| |||||||||| |  |||||||||||||||||||| |||| | ||||| | |||||||||||    
T  28321019 ttatatgtacaattaaaattggacaacttatgcaacaacctttgactttgtgaggagcacgcaaatcaaaatcaataaaaaagtattaaaaaat 28321112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 509
Target Start/End: Original strand, 8735260 - 8735310
Alignment:
Q  459 ttagtgaatgttgagtttgaaattgattcgaagaaagtcattgattatttt 509  Q
    |||| ||||||||| |||||||| ||||||||||||||| || ||||||||    
T  8735260 ttagcgaatgttgattttgaaatggattcgaagaaagtcgttcattatttt 8735310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 9245797 - 9245940
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||||||||||| |||||||||||| |||||| |||||| ||||||||||||||| | ||||||||  |||| | |||||||||||||||||||||||||    
T  9245797 ttatttgtacaatcaaaattgaacaacttatgcaacaacttttaatattgtgaggtgtacgcaaataaaaatcattaaaagaatattaaaaaatagcaaa 9245896  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9245897 atagttgttggttgtacaaaaatgatgtcaatatatcattcctc 9245940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 26028978 - 26029105
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||| ||||||| ||| |||||  ||||| |||| | | ||||||||||||||||||| |||| | |||||  ||||||||||||| ||||    
T  26028978 ttatttgtacaactaaaattgtacaacttatacaacaatctttgacaatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaaataacaaa 26029077  T
Q  179 atagttgttggttgtacaaaaatgatgt 206  Q
    | |||||||| |||||||||||||||||    
T  26029078 aaagttgttgcttgtacaaaaatgatgt 26029105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 49775804 - 49775688
Alignment:
Q  105 cttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgat 204  Q
    |||||| |||||||||| | | ||||| ||||||||||||| |||| | |||||  ||||||||||||| ||||| ||||||||||||||||||||||||    
T  49775804 cttatgcaacaacctttgacaatgtgaagagcacgcaaatcaaaatcaataaaaatatattaaaaaataacaaaaaagttgttggttgtacaaaaatgat 49775705  T
Q  205 gtcaatatatcattcct 221  Q
    ||  | |||||||||||    
T  49775704 gttcaaatatcattcct 49775688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 47030434 - 47030580
Alignment:
Q  77 ttttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagca 176  Q
    |||||| |||||||||||||||||||| || ||| ||||||| || ||| |||||| |||||| |||| ||||| | |||||  ||| ||||| || |||    
T  47030434 ttttatatgtacaaccaaaattgaacaactaatgcaacaaccattgataatgtgagaagcacgtaaattgaaatcattaaaaatatagtaaaatattgca 47030533  T
Q  177 aaatagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
    ||| |||| |||||||||| |||| |||||  |||||||||| ||||    
T  47030534 aaagagttattggttgtaccaaaacgatgttcatatatcattgctct 47030580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 30057576 - 30057697
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||||||||||| ||  |||||| |||||| ||| | | |||||||| ||| |||||| |||| | || ||  ||||||||||||||||||    
T  30057576 ttatttgtacaaccaaaattgtac--cttatgcaacaacttttgacaatgtgaggaacactcaaatcaaaatcagtacaaatatattaaaaaatagcaaa 30057673  T
Q  179 ata-gttgttggttgtacaaaaat 201  Q
    | | ||||||||||||||||||||    
T  30057674 aaatgttgttggttgtacaaaaat 30057697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 227
Target Start/End: Complemental strand, 6797558 - 6797411
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||| ||||||||||| || ||| |||| ||||||||| |||||| |||||||||||  |||| | |||||  ||||||||||||    ||    
T  6797558 ttatatgtacaactaaaattgaacaactaatgcaacaccctttaataatgtgagaagcacgcaaattaaaatcattaaaaatatattaaaaaat-tataa 6797460  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctctaaaa 227  Q
    | |||| |||||||||  ||||||||||  |||||||||| || |||||    
T  6797459 agagttattggttgtatcaaaatgatgttcatatatcattactttaaaa 6797411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 1141610 - 1141472
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagca-cgcaaatcgaaataactaaaagaatattaaaaaatagcaa 177  Q
    |||| |||||||||||||||||| | || ||| |||| ||||||||| ||| || || | |||||||| |||| | ||||| | ||||||||| || |||    
T  1141610 ttatatgtacaaccaaaattgaataactaatgcaacaccctttaataatgtaagaagaaacgcaaatcaaaattattaaaata-tattaaaaatta-caa 1141513  T
Q  178 aatagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    || ||||||||||| ||| ||||||||||  ||||||||||    
T  1141512 aagagttgttggttatactaaaatgatgttcatatatcatt 1141472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 43202447 - 43202343
Alignment:
Q  118 ctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcat 217  Q
    |||||||||||||| |||||||||||||||||| || |||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43202447 ctttaatattgtgaagagcacgcaaatcgaaatcaccaaaaaagtattaaaaaatagcaaaataattgttggttgtacaaaaatgatgtcaatatatcat 43202348  T
Q  218 tcctc 222  Q
    |||||    
T  43202347 tcctc 43202343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 46205831 - 46205982
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaa 170  Q
    ||||||| |||| |||||||||||||||| ||| || ||| |||| | |||||||||||||||||||||  ||||||||| ||||||| ||||||| |||    
T  46205831 gagcaatgttatatgtacaaccaaaattggacaactaatgcaacaccttttaatattgtgaggagcacgtgaatcgaaatcactaaaaaaatattataaa 46205930  T
Q  171 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctc 222  Q
    |||| ||||  |||||||||||||||||||||||||   |||||||||||||    
T  46205931 atagtaaaaaggttgttggttgtacaaaaatgatgttcttatatcattcctc 46205982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 79 - 225
Target Start/End: Complemental strand, 37961663 - 37961517
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||| |||  ||||| |||||||||| | ||||||||||||||||||||| |||| | ||||| | |||||||||||  ||||    
T  37961663 ttatatgtacaaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacgcaaatcaaaatcagtaaaaaagtattaaaaaattacaaa 37961564  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctctaa 225  Q
      | ||||||||||||||||||| ||||  ||||||| |||||||||    
T  37961563 gaaattgttggttgtacaaaaattatgttcatatatcgttcctctaa 37961517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 22609944 - 22609805
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||||||| || ||| |||| ||||| ||| |||||| |||||||||||| |||| | |||||  ||||| |||||| |||||    
T  22609944 ttatatgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatatttaaaaattgcaaa 22609845  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    | |||||||| |||||  ||||||||||  ||||||||||    
T  22609844 agagttgttgattgtatcaaaatgatgttcatatatcatt 22609805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 29772487 - 29772344
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| ||||||| || ||||||||| |||||| |||||| ||| |||||||||||||||| |||||  || ||  ||||| |||||||||||||   |||    
T  29772487 ttatatgtacaatcagaattgaacaacttatgcaacaacttttgatattgtgaggagcacacaaattaaagtaggtaaaa-aatattaaaaaattataaa 29772389  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
      |||| ||||||||| |||||||||||  |||||||||||||||    
T  29772388 gaagttattggttgtataaaaatgatgttcatatatcattcctct 29772344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 6728827 - 6728911
Alignment:
Q  133 gagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattc 219  Q
    ||||||||||||| || ||| ||||| ||||||||||| ||| |||  ||||||||||||||||||||||||||  |||||||||||    
T  6728827 gagcacgcaaatcaaagtaagtaaaa-aatattaaaaa-tagtaaagaagttgttggttgtacaaaaatgatgttcatatatcattc 6728911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 6e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 38360180 - 38360327
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||| |||  ||||| |||||||||| | ||||||||||||||||||||  |||| | ||||| | ||||||||||| |||||    
T  38360180 ttatatgtacaaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacgcaaattaaaatcagtaaaaaagtattaaaaaattgcaaa 38360279  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctctaaa 226  Q
      ||||||| ||||||||||||| ||||  ||||||||||||||||||    
T  38360280 gaagttgttcgttgtacaaaaattatgttcatatatcattcctctaaa 38360327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 54383672 - 54383812
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||||||| || ||| |||| ||||| |||  ||||| |||||||||||| |||| | |||||  |||||||||||| |||||    
T  54383672 ttatatgtacaaccaaaattgaacaactaatgcaacatcctttgataacgtgagaagcacgcaaatcaaaattattaaaaatatattaaaaaattgcaaa 54383771  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattc 219  Q
    | ||||||||| ||||| ||||||||||  |||||||||||    
T  54383772 agagttgttggctgtaccaaaatgatgttcatatatcattc 54383812  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 8914006 - 8913903
Alignment:
Q  72 agcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaat-aactaaaagaatattaaaaa 170  Q
    |||||| |||||||||||| |||||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||| ||  |||| |||||||||||    
T  8914006 agcaatgttatttgtacaatcaaaattgaacaactaatgcaacaacctttaatattgtgaggagcacacaaatcgaaatcaataaaaaaaatattaaaaa 8913907  T
Q  171 atag 174  Q
    ||||    
T  8913906 atag 8913903  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 26813969 - 26814085
Alignment:
Q  106 ttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatg 205  Q
    ||||| |||||||||| | | |||||| |||||||||||| |||| | |||||  |||||||||||||| |||| |||||||||||||||||||||||||    
T  26813969 ttatgcaacaacctttgacaatgtgagaagcacgcaaatcaaaatcagtaaaaatatattaaaaaatagtaaaaaagttgttggttgtacaaaaatgatg 26814068  T
Q  206 tcaatatatcattcctc 222  Q
    |  | ||||||||||||    
T  26814069 ttcaaatatcattcctc 26814085  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 17071967 - 17071865
Alignment:
Q  120 ttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattc 219  Q
    |||||||||||||||||||| ||||| |||| | ||||| ||||||||||||| | |||| |||||||| ||||| || ||| ||||  |||||||||||    
T  17071967 ttaatattgtgaggagcacgtaaatcaaaatgaataaaaaaatattaaaaaattgtaaaaaagttgttgattgtataagaataatgtttatatatcattc 17071868  T
Q  220 ctc 222  Q
    |||    
T  17071867 ctc 17071865  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 41410547 - 41410638
Alignment:
Q  127 tgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    |||||| |||||||||||| |||| | |||||  |||||||||||| |||||| ||||||| ||||||| |||||||| |  ||||||||||    
T  41410547 tgtgagaagcacgcaaatcaaaattattaaaaatatattaaaaaattgcaaaagagttgttagttgtaccaaaatgatattcatatatcatt 41410638  T

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Target: chr2 (Bit Score: 68; Significance: 6e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 24442054 - 24441951
Alignment:
Q  119 tttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||||   |||||||||    
T  24442054 tttaatattgtgaggagcatgcaaatcgaaatcactaaaaaaatattataaaatagcaaaaaggttgttggttgtacaaaaatgatgttcttatatcatt 24441955  T
Q  219 cctc 222  Q
    ||||    
T  24441954 cctc 24441951  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 40611708 - 40611581
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||| | | ||| ||| |||||| |||||||||| | | ||||||||||||||||||| |||| | |||||  ||||||||||||||||||    
T  40611708 ttatttgtacaacgatatttgtacaacttatgcaacaacctttgacaatgtgaggagcacgcaaatcaaaatcaataaaaatatattaaaaaatagcaaa 40611609  T
Q  179 atagttgttggttgtacaaaaatgatgt 206  Q
    | ||||||||||||||||||||||||||    
T  40611608 aaagttgttggttgtacaaaaatgatgt 40611581  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 33425109 - 33425247
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| ||||||  |||||||| ||| |||||| ||||| |||| |||||||||| |||||||||||| |||| | ||||| ||||||||||| | | |||    
T  33425109 ttatatgtacattcaaaattggacaacttatgcaacaatctttgatattgtgagaagcacgcaaatcaaaatcaataaaa-aatattaaaaatttgtaaa 33425207  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
      ||||||||||| ||||||||||||||  ||||||||||    
T  33425208 gaagttgttggttatacaaaaatgatgttcatatatcatt 33425247  T

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Target: scaffold0227 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 5051 - 5193
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||| ||||||| |||  ||||| ||||| |||| ||||||| |||| |||||||||| |||| | ||||| | ||||||||||| |||||    
T  5051 ttatatgtacaactaaaattggacaatttatgcaacaatctttgatattgtaaggaacacgcaaatcaaaatcattaaaaaagtattaaaaaattgcaaa 5150  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcct 221  Q
      ||||||||||||||||||| | ||||  |||||||||||||    
T  5151 gaagttgttggttgtacaaaacttatgttcatatatcattcct 5193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 35769 - 35910
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||| ||||||| || ||||||||   ||| | |||||||||||||||||||||||||| | ||||| |||||||||||||  ||||    
T  35769 ttatatgtacaaccaaatttgaacaactaatgtaacattttttgacattgtgaggagcacgcaaatcgaaattattaaaa-aatattaaaaaat-ccaaa 35866  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctc 222  Q
    | |||||||| |||||| ||||| || |  ||||||||||||||    
T  35867 agagttgttgattgtaccaaaataatattcatatatcattcctc 35910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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