View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11640_high_5 (Length: 573)
Name: NF11640_high_5
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11640_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 273 - 541
Target Start/End: Complemental strand, 45512530 - 45512262
Alignment:
| Q |
273 |
attcatgagatcaagcttggtaacatgtccagtaacattgtcacaaccaatgccttcccattgacaacattgagtgcctttccatgatgaaagcttgttt |
372 |
Q |
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| T |
45512530 |
attcatgagatcaagtttgacaacatgtctagtaacattgtcacaaccaatgccttcccattggcaacagtgagtgcctttccatgatgaaagcttgttt |
45512431 |
T |
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| Q |
373 |
ggtgaatcttttgcaatggatgctttgaaatcgagaagggcttgcctctctttttcaacgcaggggatgtttgaatttacacacaagcatatttgtgcaa |
472 |
Q |
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| T |
45512430 |
ggtgaatcatgtgcaatggatgctttgaaattgagaagggcttgcctctctttttcaatacaggggatgtttgaatttacacacaagcatatttgtgcaa |
45512331 |
T |
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| Q |
473 |
tttcaatcaacaccaaaagcactacacgtttgtaatatcttcccatgctttctctctgtgtttctattg |
541 |
Q |
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| T |
45512330 |
tttcaatcaacaccaaaagtactacacatttgtaatatcttcccatgttttctatctctgtttctattg |
45512262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 26 - 244
Target Start/End: Complemental strand, 45512846 - 45512625
Alignment:
| Q |
26 |
aatagtaatcggagctgagatcaagaaactgtaggttcttgagatttccgagactgttgggaatcttcccgctaaaacgagcataag--agagagagatg |
123 |
Q |
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| T |
45512846 |
aatagtaattgaagctgagatcaaggaatcgtaggttcttgagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagata |
45512747 |
T |
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| Q |
124 |
ctcaaggcttcccatggaaccgatgaacatgggaattggactctcacggaaatcacttccagacaagtccaaat-agtcaagtgttccaattgcaacaaa |
222 |
Q |
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| T |
45512746 |
ctcaaggcgtcccatggaacccaagaacataggaattggactcccactgaaattatttccagacaagtccaaataagtcaagtgttccaattgcaacaaa |
45512647 |
T |
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| Q |
223 |
gatgaactgacatttggagcaa |
244 |
Q |
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| T |
45512646 |
gatgagctcacatttggagcaa |
45512625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 22848800 - 22848917
Alignment:
| Q |
111 |
agagagagagatgctcaaggcttcccatggaaccgatgaacatgggaattggactctcacggaaatcacttccagacaagtccaaat-agtcaagtgttc |
209 |
Q |
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| T |
22848800 |
agagagagagatactcaagacgtcccatggaacctacgaacataggaattggactcaaattgaaatcatttccagtcaagtccaaataagtcaagtattc |
22848899 |
T |
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| Q |
210 |
caattgcaacaaagatga |
227 |
Q |
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||| |||||||||||||| |
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| T |
22848900 |
caagtgcaacaaagatga |
22848917 |
T |
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