View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11640_high_6 (Length: 570)
Name: NF11640_high_6
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11640_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 12 - 552
Target Start/End: Original strand, 44500726 - 44501265
Alignment:
| Q |
12 |
agagaccatcaatgattttatgttagcaagctctagtatccagctgaatagaaaataaggagagtcttcgctaaatggaactacatgtgcataaatatct |
111 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44500726 |
agagaccgtcaatgattttatgttagcaagctctagtagccagctgaat-gaaaataaggagagtcttcgctaaatggaactacatgtgcataaatatct |
44500824 |
T |
|
| Q |
112 |
acatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggagaacttagatcaatgttgt |
211 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44500825 |
acatgtttaagagaagaagcattgcttccagaaagattctgataatgactaccagtaaaaacaaacttacaaagacttggagtacttagatcaatgttgt |
44500924 |
T |
|
| Q |
212 |
aaaggttgtatatgtttttatccatgtttaaattgacaagtgtttcatttgatatggagagagtttgtgcacccttcacggtacaatcgtgaaggaccaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44500925 |
aaaggttgtatatgtttttatccatggttaaattgacaagtgtttcatttgatatggagagagtttgtgcacccttcacggtacaatcgtgaaggaccaa |
44501024 |
T |
|
| Q |
312 |
actattcaatctgttaaaggttgaaaatggctcggcatggtcattatcctcggcagaaaatgcaaaatgccatagttgcaaattggttaatgcaggaaaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44501025 |
actattcaatctgttaaaggttgaaaatggctcggcacggtcattatcctcagcagaaaatgcaaaatgccatagttgcaaattggttaatgcaggaaaa |
44501124 |
T |
|
| Q |
412 |
ttgagagatttcggaaacattgtttcatgacctacaccagagtaaataccaagcttaaaatatgtcaaagtctgagatgaaaatatgctaggcggaattt |
511 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44501125 |
ttgagagatttcggaaacattgtttcatgacctacaccagagtaaataccaagcttaaaatatgtcaaagtctgagatgaaaatatgctaggcggaattt |
44501224 |
T |
|
| Q |
512 |
gtgcattgtcagcaaggacactaagtcctgacagctggact |
552 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||||||| |
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| T |
44501225 |
gtgcattgtcagcatggacactaagtcctgaccgctggact |
44501265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 45910473 - 45910579
Alignment:
| Q |
99 |
tgcataaatatctacatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggagaactt |
198 |
Q |
| |
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||||| ||| ||||||||||||||||||||| ||||| || |||| ||||||||| || || | || | |||||||||| ||||||||||||||| || | |
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| T |
45910473 |
tgcatgaatctctacatgtttaagagaagaaacattgtttgcagagagtttctgaaaaggagtaccggaaaaaacaaacgtacaaagacttggagtacat |
45910572 |
T |
|
| Q |
199 |
agatcaa |
205 |
Q |
| |
|
||||||| |
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|
| T |
45910573 |
agatcaa |
45910579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 20977941 - 20977891
Alignment:
| Q |
309 |
caaactattcaatctgttaaaggttgaaaatggctcggcatggtcattatc |
359 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
20977941 |
caaactattcaacctgttaaaggcagaaaatggctcggcatggtcattatc |
20977891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 20994274 - 20994388
Alignment:
| Q |
99 |
tgcataaatatctacatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggagaactt |
198 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||| ||| | | |||||||| || | ||| ||||| |||| ||||||||||||||| || | |
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|
| T |
20994274 |
tgcatgaatatctacatgtttaagagaagaaatattgctcccaatgattctctgataaggaataccattaaaagtaaacgtacaaagacttggagtacat |
20994373 |
T |
|
| Q |
199 |
agatcaatgttgtaa |
213 |
Q |
| |
|
|| ||||| |||||| |
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|
| T |
20994374 |
agctcaatcttgtaa |
20994388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 2995864 - 2995894
Alignment:
| Q |
99 |
tgcataaatatctacatgtttaagagaagaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
2995864 |
tgcataaatatctacatgtttaagagaagaa |
2995894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 343
Target Start/End: Original strand, 45881418 - 45881520
Alignment:
| Q |
241 |
aaattgacaagtgtttcatttgatatggagagagtttgtgcacccttcacggtacaatcgtgaaggaccaaactattcaatctgttaaaggttgaaaatg |
340 |
Q |
| |
|
|||||||||||||| || |||||||| | || ||| ||||| |||||| | |||| | |||||||||||||||||| | ||| ||||||||||||| |
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|
| T |
45881418 |
aaattgacaagtgtggcacttgatatgcaaagggttggtgcatccttcaaagcacaactataaaggaccaaactattcaaccggttcaaggttgaaaatg |
45881517 |
T |
|
| Q |
341 |
gct |
343 |
Q |
| |
|
||| |
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|
| T |
45881518 |
gct |
45881520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 45856384 - 45856484
Alignment:
| Q |
241 |
aaattgacaagtgtttcatttgatatggagagagtttgtgcacccttcacggtacaatcgtgaaggaccaaactattcaatctgttaaaggttgaaaatg |
340 |
Q |
| |
|
|||||||| ||||| || |||||||| | || ||| |||| |||||| | ||||| || |||||||||||||||||| | |||||||||||||||| |
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| T |
45856384 |
aaattgactagtgtggcacttgatatgcaaagggttactgcatccttcaaagcacaattgtaaaggaccaaactattcaaccgtttaaaggttgaaaatg |
45856483 |
T |
|
| Q |
341 |
g |
341 |
Q |
| |
|
| |
|
|
| T |
45856484 |
g |
45856484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 99 - 441
Target Start/End: Complemental strand, 3978822 - 3978480
Alignment:
| Q |
99 |
tgcataaatatctacatgtttaagagaagaagcattgcttccagaaagtttctgataatgactgccagtaaaaacaaacttacaaagacttggagaactt |
198 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | |||| ||||| || || ||||| || | || |||||||||||||| ||||||||||||| || | |
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|
| T |
3978822 |
tgcatcaatatctacatgtttaagagaagaaatactgctcccagatagactcagataaggagtaccggtaaaaacaaacttccaaagacttggagtacat |
3978723 |
T |
|
| Q |
199 |
agatcaatgttgtaaaggttgtatatgtttttatccatgtttaaattgacaagtgtttcatttgatatggagagagtttgtgcacccttcacggtacaat |
298 |
Q |
| |
|
| |||||| | |||| | || || ||| | || || ||||||||||||| || || |||||||| ||| |||| | ||||| | || ||||| |
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|
| T |
3978722 |
aaatcaatttcgtaatagatggatctgtcatgatatatagttaaattgacaagggtcacacttgatatgcggagtgtttttccaccccttacaacacaat |
3978623 |
T |
|
| Q |
299 |
cgtgaaggaccaaactattcaatctgttaaaggttgaaaatggctcggcatggtcattatcctcggcagaaaatgcaaaatgccatagttgcaaattggt |
398 |
Q |
| |
|
| | || |||||||||||| |||||||| | ||||||||||||||| |||||||| || || |||| |||||| || || |||||| || || |
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|
| T |
3978622 |
tgcacatgagcaaactattcaacctgttaaaaatcgaaaatggctcggcacaatcattatcgtcaacatcaaatacaaaatcccctaattgcaagttcgt |
3978523 |
T |
|
| Q |
399 |
taatgcaggaaaattgagagatttcggaaacattgtttcatga |
441 |
Q |
| |
|
||| || || |||||||||||||| |||||| |||||||||| |
|
|
| T |
3978522 |
taaagccggcaaattgagagattttggaaacggtgtttcatga |
3978480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 36590905 - 36590993
Alignment:
| Q |
241 |
aaattgacaagtgtttcatttgatatggagagagtttgtgcacccttcacggtacaatcgtgaaggaccaaactattcaatctgttaaa |
329 |
Q |
| |
|
|||||||||||||| ||| || ||||| | ||| | || ||| ||||||| ||||||| || || ||||||||||||||| ||||||| |
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|
| T |
36590905 |
aaattgacaagtgtctcacttaatatgcaaagaatctgcgcatccttcaccgtacaattgtcaatgaccaaactattcaacttgttaaa |
36590993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 7895530 - 7895468
Alignment:
| Q |
286 |
ttcacggtacaatcgtgaaggaccaaactattcaatctgttaaaggttgaaaatggctcggca |
348 |
Q |
| |
|
|||| |||||||| | ||||| |||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
7895530 |
ttcaaggtacaattggtaaggagcaaactattcaacttgttaaaagttgaaaatggctcggca |
7895468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 500
Target Start/End: Complemental strand, 7895403 - 7895311
Alignment:
| Q |
409 |
aaattgagagatttcggaaacattgtttcatgacctacaccagagtaaa-taccaagcttaaaatatgtcaaagtctgagatgaaaatatgct |
500 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||| || || ||||| ||| |||||||| || ||| |||| |||| ||||||| ||||| |
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|
| T |
7895403 |
aaattgaaagattttggaaacagtgtttcatgacctccattagggtaaagtacaaagcttaagatgtgttaaagactgacatgaaaacatgct |
7895311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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