View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11640_high_7 (Length: 436)
Name: NF11640_high_7
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11640_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 36746578 - 36746173
Alignment:
| Q |
18 |
acattcatgcataaataaaccaatgttcatctatgcatgtgttatttgaggttacagcaaaagaaaaccagactctagaacaccaaaatacaacatttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36746578 |
acattcatgcataaataaaccaatgttcatctatgcatgtgttatttgaggttacagaaaaagaaaaccagactctagaacaccaaaatacaacatttga |
36746479 |
T |
|
| Q |
118 |
ttaacaaacaaacatacttgtacatagacaagatcagtctcatctatgtattttattgaaagttgcagcaacaatacttgtagggtagcttaaagagatc |
217 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36746478 |
ttaacaaacaaacatatatgtacatagacaagatcagtctcatctatgtattttattgaaagttgcagcaacaatacttgtagggtagcttaaagagatc |
36746379 |
T |
|
| Q |
218 |
cttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatcttaaccgggccagttcggtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36746378 |
cttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatcttaaccgggccagttcggtt |
36746279 |
T |
|
| Q |
318 |
aagcaaatctggttctttgtttctgctttcgannnnnnnctcgatgtcttccatcttctttgcaaaccttttgaaggctactcttgccttttcatctgat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36746278 |
aagcaaatctggttctttgtttctgctttcaatttttttctcgatgtcttccatcttctttgcaaaccttttgaaggctactcttgccttttcatctgct |
36746179 |
T |
|
| Q |
418 |
gtccat |
423 |
Q |
| |
|
|||||| |
|
|
| T |
36746178 |
gtccat |
36746173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 29014439 - 29014396
Alignment:
| Q |
138 |
tacatagacaagatcagtctcatctatgtattttattgaaagtt |
181 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29014439 |
tacatagacaacatcagtctcatctatgtattttattgaaagtt |
29014396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 6361701 - 6361781
Alignment:
| Q |
219 |
ttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatctt |
299 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||||| ||||| |||| | ||| |||||| |||||| |||||||| |
|
|
| T |
6361701 |
ttagatagagacactgttgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcagagtgtaaggcatctt |
6361781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 6287290 - 6287358
Alignment:
| Q |
231 |
actattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatctt |
299 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||| | ||| |||||||||| || |||||||| |
|
|
| T |
6287290 |
actattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatctt |
6287358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University