View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11640_low_10 (Length: 386)
Name: NF11640_low_10
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11640_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 12529261 - 12529119
Alignment:
| Q |
21 |
gtataagaatttaggaacaaaatatgttttaaaagtaatagatgaaatgataattatgctttaatttaaacttaaactagtttgaaagtattttattcaa |
120 |
Q |
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| T |
12529261 |
gtataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataattatgctttaatttaaacttaaactagtttgaaattattttaaacaa |
12529162 |
T |
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| Q |
121 |
ataaatattatgtaagatctttatggtaattacttgtcaaattgct |
166 |
Q |
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| T |
12529161 |
ataaatattatgtaagatctttattg---ttacttgtcaaattgct |
12529119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 348
Target Start/End: Complemental strand, 12529098 - 12528976
Alignment:
| Q |
224 |
ctgattatagtgctaatgaataattgtgttttcttggtaattaaaagatgatattttgatagaaccaaataactaggtagaagttaattgaaacttttat |
323 |
Q |
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| T |
12529098 |
ctgattatagtgctaatgaataaccgtgtttccttagtaattaaaagattatattttgatagaaccaaataactaggcacaagttagttgaaa--attat |
12529001 |
T |
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| Q |
324 |
accgtaaccccaaaccaaagccttt |
348 |
Q |
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|||||||| ||||||||||||||| |
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| T |
12529000 |
accgtaacttcaaaccaaagccttt |
12528976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 224 - 359
Target Start/End: Original strand, 44668578 - 44668711
Alignment:
| Q |
224 |
ctgattatagtgctaatgaataattgtgttttcttggtaattaaaagatgatattttgatagaaccaaataactaggtagaagttaattgaaacttttat |
323 |
Q |
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| T |
44668578 |
ctgattatagtgctaatgaataaccgtgtttccttagtaattaaaagattatattttgatagaaccaaataactaggtacaagttagttgaaa--attat |
44668675 |
T |
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| Q |
324 |
accgtaaccccaaaccaaagcctttggtaaggatca |
359 |
Q |
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| T |
44668676 |
accgttaccccaaaccaaagcctttaataaggatca |
44668711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 44668454 - 44668557
Alignment:
| Q |
60 |
agatgaaatgataattatgctttaatttaaacttaaactagtttgaaagtattttattcaaataaatattatgtaagatctttatggtaattacttgtca |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||| |
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| T |
44668454 |
agatgaaatgataattatgctttaatttaaacttaaactagtttgaaattattttaaccaaataaatattatgtaagatctttattg---ttacttgtca |
44668550 |
T |
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| Q |
160 |
aattgct |
166 |
Q |
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||||||| |
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| T |
44668551 |
aattgct |
44668557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 44668384 - 44668438
Alignment:
| Q |
21 |
gtataagaatttaggaacaaaatatgttttaaaagtaatagatgaaatgataatt |
75 |
Q |
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||||||||||||||| | | | |||||||||| ||||||||||||||||||||| |
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| T |
44668384 |
gtataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataatt |
44668438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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