View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11640_low_13 (Length: 365)
Name: NF11640_low_13
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11640_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 42178652 - 42178312
Alignment:
| Q |
18 |
cacgtgggtcgaaataagcagtgttctctggcttgtttgtttaagggatgaagtttacaataaggtagatgcatgcatatcttattccccttcaattatt |
117 |
Q |
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| T |
42178652 |
cacgtgggtcgaaataagcagtgttctctggcttgtttgtttaagggatgaagtttacaataaggtagatgcatgcatatcttattcctcttcaattatt |
42178553 |
T |
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| Q |
118 |
gaatattctgttccatgctattttgatgaaacctatgaattaataaataaaattata-gttgccttgaagaatatctctcaa-tttttacacctaagctt |
215 |
Q |
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| T |
42178552 |
gaatattctgttccatgctattttgatgaaacctatgaattaataaataaaattatatgttgccttgaagaatatctcacaattttttacacctaagctt |
42178453 |
T |
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| Q |
216 |
gctatgacgttaatttgagtggtgca-ttttgtttcatgagcggttctatatggcatgatactctatcacacaaattgcacatgacatgaatgtgttttc |
314 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42178452 |
gctatgacgttaatttgagaggtgcatttttgtttcatgagcggttctatatggcatgatactctatcacacaaattgcacatgacatgagtgtgttttc |
42178353 |
T |
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| Q |
315 |
catgcttgttttgcttgtctcatgaatgtgcctatgcttct |
355 |
Q |
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| T |
42178352 |
catgcttgttttgcttgtctcatgaatgtgcttatgcttct |
42178312 |
T |
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