View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11640_low_18 (Length: 268)
Name: NF11640_low_18
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11640_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 29489229 - 29488980
Alignment:
| Q |
19 |
cgtgatgcagtggaacaccataaatttacagtcagacagcaccattataaagtttggtccaactaatgaattnnnnnnngacaatctcatttaattctca |
118 |
Q |
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| T |
29489229 |
cgtgatgcagtggaacaccataaatttacagtcagacagcaccattataaagtttggtccaactaatgaatt-ccccccgacaatctcacttaattctca |
29489131 |
T |
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| Q |
119 |
acaaatagggcacaattttagtggtcgtagttactcat--------ccaaaactttggattttattttctataggttcttagcacgaaaggaaatattat |
210 |
Q |
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| T |
29489130 |
acaaatagggcacaattttagtggtcgtagttactcatccaaaagaccaaaactttggattttattttctataggttcttagcacgagaggaaatattat |
29489031 |
T |
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| Q |
211 |
ttgaa--gtgtgtggaaactaaatacgtcatattcgaacattgattcgtcacgttgtacc |
268 |
Q |
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| T |
29489030 |
ttgaattgtgtgtggaaa---------tcatattcgaacattgattcgtcacattgtacc |
29488980 |
T |
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