View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11640_low_8 (Length: 408)
Name: NF11640_low_8
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11640_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 32858431 - 32858060
Alignment:
| Q |
17 |
agatatggcctcgcacactttcatgcctttttcttgttgttacacttcgtaacataaagcagcacttgttttataatcagcagaaaggacctgactatcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32858431 |
agatatggcctcgcacactttcatgcttttttcttgttgttacacttcgtaacataaagcagcacttgttttataatcagcagaaaggacctgactatcc |
32858332 |
T |
|
| Q |
117 |
ctgatctatatatatagtagaagacgaatgactaatgatgtgagcattaaactttatatacagtcaaaatacaaataggaaattacaatttaacaccaga |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32858331 |
ctgatctatata----gtagaagacgaatgactaatgatgtgagcattaaactttatatacagtcaaaatacaaataggaaattacaatttaacaccaga |
32858236 |
T |
|
| Q |
217 |
tgcctttcttaagcatgatctttatcttcaattctctatttgctgattccacttggtgatctttagctatttctttgaagcctggttccttttgttcaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32858235 |
tgcctttcttaagcatgatctttatcttcaattctctatttgctgattccacttggtgatctttagctatttctttgaagcctggttccttttgttcaca |
32858136 |
T |
|
| Q |
317 |
aaaagtattatgattacattattagtgcaccgattataaataataggctaaattacgttactttaagatatttgat |
392 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32858135 |
aaaagtattatgtttacattattagtgcaccgattataaataataggctaaattacgttactttaagatatttgat |
32858060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University