View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11640_low_9 (Length: 387)
Name: NF11640_low_9
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11640_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 44476803 - 44476445
Alignment:
| Q |
11 |
cacagacaatctgcgagtccaccgtaaaccctcccttttgcaaaactctacttgctaaccaaaacggcaccgtaattgactatggtcgtttctctatccg |
110 |
Q |
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| T |
44476803 |
cacaaacaatctgcgagtccaccgtaaaccctcccttttgcaaaactctacttgctaaccaaaacggcaccgtaattgactatggtcgtttctccatccg |
44476704 |
T |
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| Q |
111 |
aaaatccttatcccaatcccgcaaattcttaaacttagtactttcgtatcttcaagataaatcatctttgtcacaaccaacaatttcagctcttaaagat |
210 |
Q |
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| T |
44476703 |
aaaatccttatcccaatcccgcaaattcttaaacttagtactttcgtatcttcaagataaatcatctttgtcacaaccaacaatttcagctcttaaagat |
44476604 |
T |
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| Q |
211 |
tgtcaatttctagcccaacaaaatttcgaattcttatcaaacactcatcaaactgctaataaaactagcaatgttcttcccatttctcaaggcgaagaat |
310 |
Q |
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| T |
44476603 |
tgtcaatttctagcccaacaaaatttcgaattcttatcaaacactcatcaaactgctaataaaactagcaatgttcttcccatttctcaaggcgaagaat |
44476504 |
T |
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| Q |
311 |
tacaaaccttgcttagtgctgttttaacaaaccaacaaacttgtttagatggtttagtt |
369 |
Q |
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| T |
44476503 |
tacaaaccttgcttagtgctgttttaacaaaccaacaaacttgtttagatggtttagtt |
44476445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 37166677 - 37166625
Alignment:
| Q |
313 |
caaaccttgcttagtgctgttttaacaaaccaacaaacttgtttagatggttt |
365 |
Q |
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| T |
37166677 |
caaacattgcttagtgctgttttaactaatcatcaaacatgtttagatggttt |
37166625 |
T |
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