View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11641_high_12 (Length: 364)
Name: NF11641_high_12
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 21115764 - 21115435
Alignment:
| Q |
17 |
ctgcctttgcaaataatcatagcttaatttaaggcaacttaaagtagtccttactcctccttcatcattagatgcttttgaatccctcaacttatcaaac |
116 |
Q |
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| T |
21115764 |
ctgcctttgcaaataatcatagcttaatttaaggcaacttaaagtagtcctcactcctccttcatcattggatgcctttgaatccctcaacttatctaac |
21115665 |
T |
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| Q |
117 |
gcctgctgccacaactcaatttcatgccttccttttaaggacgaccctatagttttgattgataagggaagtccattacactcattgcagacttcccgtg |
216 |
Q |
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| T |
21115664 |
gcctgctgccacaactcaatttcatgccttccttttaaggacgaccctatagttttgattgataagggaagtccattacactcattgcagacttcccgtg |
21115565 |
T |
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| Q |
217 |
gcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagattcatcttcagacaagagccccaaatgaatctt |
316 |
Q |
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| T |
21115564 |
gcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagattcatcttcagacaagagccccaaatgaatctt |
21115465 |
T |
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| Q |
317 |
cttttgacagtccattgatgtacagacatg |
346 |
Q |
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| T |
21115464 |
cttttgacagtccattgatgtacagacatg |
21115435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 325
Target Start/End: Complemental strand, 21123043 - 21122883
Alignment:
| Q |
165 |
atagttttgattgataagggaagtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaact |
264 |
Q |
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| T |
21123043 |
atagttttgattgctaagggaagtcccttgcattcatagcagatttcttgtggtacaccatctaatgacacagagaattcgtcatcaattactgcaagct |
21122944 |
T |
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| Q |
265 |
tttggaataatgtccaagattcatcttcagacaagagccccaaatgaatcttcttttgaca |
325 |
Q |
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| T |
21122943 |
tttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcatcttgtgaca |
21122883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 332
Target Start/End: Original strand, 21715368 - 21715514
Alignment:
| Q |
186 |
agtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagatt |
285 |
Q |
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||||| ||||| | || ||||| ||| |||||||||||||||| | ||||||| | | |||| ||| ||||| ||||||||| || ||||| |||| |
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| T |
21715368 |
agtcccttacatttatcgcagagttctcgtggcacaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggatt |
21715467 |
T |
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| Q |
286 |
catcttcagacaagagccccaaatgaatcttcttttgacagtccatt |
332 |
Q |
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| T |
21715468 |
catctttagataagagcgccaggtgaatattcttttgacagtccatt |
21715514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 334
Target Start/End: Complemental strand, 21622647 - 21622499
Alignment:
| Q |
186 |
agtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagatt |
285 |
Q |
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||||| ||||| | || ||||| ||| ||||||| |||||||| | ||||||| | | |||| ||| ||||| ||||||||| || ||||| |||| |
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| T |
21622647 |
agtcccttacatttatcgcagagttctcgtggcaaaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggatt |
21622548 |
T |
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| Q |
286 |
catcttcagacaagagccccaaatgaatcttcttttgacagtccattga |
334 |
Q |
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|||||| ||| || ||| | | |||||| |||||||||||||||||||| |
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| T |
21622547 |
catctttagataaaagctctagatgaatattcttttgacagtccattga |
21622499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 334
Target Start/End: Complemental strand, 21644361 - 21644213
Alignment:
| Q |
186 |
agtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagatt |
285 |
Q |
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||||| ||||| | || ||||| ||| ||||||| |||||||| | ||||||| | | |||| ||| ||||| ||||||||| || ||||| |||| |
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| T |
21644361 |
agtcccttacatttatcgcagagttctcgtggcaaaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggatt |
21644262 |
T |
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| Q |
286 |
catcttcagacaagagccccaaatgaatcttcttttgacagtccattga |
334 |
Q |
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|||||| ||| || ||| | | |||||| |||||||||||||||||||| |
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| T |
21644261 |
catctttagataaaagctctagatgaatattcttttgacagtccattga |
21644213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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