View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11641_high_13 (Length: 328)

Name: NF11641_high_13
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11641_high_13
NF11641_high_13
[»] chr7 (15 HSPs)
chr7 (1-313)||(20414351-20414663)
chr7 (44-313)||(20455980-20456237)
chr7 (145-208)||(7327758-7327821)
chr7 (140-191)||(22534240-22534291)
chr7 (140-194)||(22525575-22525629)
chr7 (235-287)||(13888574-13888626)
chr7 (145-188)||(26217543-26217586)
chr7 (224-286)||(21210918-21210980)
chr7 (46-80)||(22534321-22534355)
chr7 (46-88)||(24391081-24391123)
chr7 (45-94)||(7327860-7327909)
chr7 (151-188)||(24016362-24016399)
chr7 (46-86)||(22021058-22021098)
chr7 (46-86)||(22036776-22036816)
chr7 (145-189)||(26236438-26236482)
[»] chr4 (2 HSPs)
chr4 (136-201)||(2910617-2910682)
chr4 (150-194)||(11982094-11982138)
[»] scaffold0128 (1 HSPs)
scaffold0128 (143-191)||(8202-8250)
[»] scaffold0064 (1 HSPs)
scaffold0064 (152-194)||(23813-23855)
[»] chr1 (1 HSPs)
chr1 (46-88)||(39379425-39379467)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 20414663 - 20414351
Alignment:
Q  1 tgcactctggaataagcggatattaattgatcaggcacaatatttaaacttttaatacttctccaaacattatcacccaaactaaaaatgctcatgttca 100  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20414663 tgcactctggaataaggggatattaattgaaaaggcacaatatttaaacttttaatacttctccaaacattatcacccaaactaaaaatgctcatgttca 20414564  T
Q  101 cctcgggttttctgagaacatttctgagaacgtcttcacaatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||    
T  20414563 cctcgggttttctgagaacatttctgagaacgtcttcacaatttaaggcaacgatcttataagtgttggttgaatcatcataaccaaacacaaacatcca 20414464  T
Q  201 agagttccgcctataattgtcagcatgcaaatatcctaatttatcagaaacttttctggtggccggattccaaaaacggagccacataactgcattatga 300  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |    
T  20414463 agagttccgtctataattgtcagcatgcaaatatcctaatttatcagaaatttttctggtggccgggttccaaaaacggagccacacaactgcattatca 20414364  T
Q  301 ttggcgagagaat 313  Q
    |||||||||||||    
T  20414363 ttggcgagagaat 20414351  T

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Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 44 - 313
Target Start/End: Complemental strand, 20456237 - 20455980
Alignment:
Q  44 ttaaacttttaatacttctccaaacattatcacccaaactaaaaatgctcatgttcacctcgggttttctgagaacatttctgagaacgtcttcacaatt 143  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| ||| |||||            ||||||||||    
T  20456237 ttaaacattgaatacttctccaaacattatcacccaaactaaaaatgctcattttaacctcaggttttttgaaaacat------------cttcacaatt 20456150  T
Q  144 taaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaagagttccgcctataattgtcagcatgcaaatatcctaattta 243  Q
     ||||||||||||||||| |||| |||||||| |||| ||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  20456149 caaggccacaaccttatatgtgtcggttgaattatcaaaacaaaacacaaacatccaagagttccgtctataattgtcatcatgcaaatatcctaattta 20456050  T
Q  244 tcagaaacttttctggtggccggattccaaaaacggagccacataactgcattatgattggcgagagaat 313  Q
    ||||||| ||| |||||||| || ||||||||||| | ||||||||||||| |||||| |||||||||||    
T  20456049 tcagaaattttcctggtggcagggttccaaaaacgaaaccacataactgcactatgatcggcgagagaat 20455980  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 7327821 - 7327758
Alignment:
Q  145 aaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaagagttcc 208  Q
    ||||| ||||||||||||||||||||||||| |||||||| |||||||||  ||||||| ||||    
T  7327821 aaggctacaaccttataagtgttggttgaattatcataacaaaacacaaacctccaagaattcc 7327758  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 22534291 - 22534240
Alignment:
Q  140 aatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacac 191  Q
    |||||||||| ||||||||||| |||| |||||||| |||||||||||||||    
T  22534291 aatttaaggctacaaccttataggtgtcggttgaattatcataaccaaacac 22534240  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 22525575 - 22525629
Alignment:
Q  140 aatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaa 194  Q
    |||||||||| ||||| ||||| |||| |||||||| ||||||||||||||||||    
T  22525575 aatttaaggctacaactttataggtgtcggttgaattatcataaccaaacacaaa 22525629  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 13888574 - 13888626
Alignment:
Q  235 cctaatttatcagaaacttttctggtggccggattccaaaaacggagccacat 287  Q
    |||||||||||||| | |||||||||||| |||||||| ||||||| ||||||    
T  13888574 cctaatttatcagatatttttctggtggcgggattccagaaacggaaccacat 13888626  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 26217586 - 26217543
Alignment:
Q  145 aaggccacaaccttataagtgttggttgaatcatcataaccaaa 188  Q
    |||||||||||||| ||||| || ||||||||||||||||||||    
T  26217586 aaggccacaaccttgtaagttttcgttgaatcatcataaccaaa 26217543  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 21210918 - 21210980
Alignment:
Q  224 catgcaaatatcctaatttatcagaaacttttctggtggccggattccaaaaacggagccaca 286  Q
    |||||||||| |||||||||||||| |  ||||||||||| || ||||| ||| |||||||||    
T  21210918 catgcaaataccctaatttatcagatatatttctggtggcggggttccagaaatggagccaca 21210980  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 22534355 - 22534321
Alignment:
Q  46 aaacttttaatacttctccaaacattatcacccaa 80  Q
    |||||||||||| ||||||||||||||||||||||    
T  22534355 aaacttttaatagttctccaaacattatcacccaa 22534321  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 24391123 - 24391081
Alignment:
Q  46 aaacttttaatacttctccaaacattatcacccaaactaaaaa 88  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||    
T  24391123 aaactttgaatatttctccaaatattatcacccaaactaaaaa 24391081  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 7327909 - 7327860
Alignment:
Q  45 taaacttttaatacttctccaaacattatcacccaaactaaaaatgctca 94  Q
    |||| ||| |||| || |||||||||||||||||||| ||||||||||||    
T  7327909 taaagtttgaatagttttccaaacattatcacccaaagtaaaaatgctca 7327860  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 24016399 - 24016362
Alignment:
Q  151 acaaccttataagtgttggttgaatcatcataaccaaa 188  Q
    |||||||||||||| || ||||||||||||||||||||    
T  24016399 acaaccttataagttttcgttgaatcatcataaccaaa 24016362  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 22021098 - 22021058
Alignment:
Q  46 aaacttttaatacttctccaaacattatcacccaaactaaa 86  Q
    ||||||| |||| |||||||||||||||| |||||||||||    
T  22021098 aaactttcaatatttctccaaacattatcgcccaaactaaa 22021058  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 22036816 - 22036776
Alignment:
Q  46 aaacttttaatacttctccaaacattatcacccaaactaaa 86  Q
    ||||||| |||| |||||||||||||||| |||||||||||    
T  22036816 aaactttcaatatttctccaaacattatcgcccaaactaaa 22036776  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 26236482 - 26236438
Alignment:
Q  145 aaggccacaaccttataagtgttggttgaatcatcataaccaaac 189  Q
    ||||| |||||||| ||||| || |||||||||||||||||||||    
T  26236482 aaggctacaaccttgtaagtttttgttgaatcatcataaccaaac 26236438  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 2910682 - 2910617
Alignment:
Q  136 tcacaatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaa 201  Q
    |||||||  ||||||||||||||||||||||  ||||||| ||||||||||||||| ||| |||||    
T  2910682 tcacaatccaaggccacaaccttataagtgtgagttgaattatcataaccaaacaccaaattccaa 2910617  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 11982094 - 11982138
Alignment:
Q  150 cacaaccttataagtgttggttgaatcatcataaccaaacacaaa 194  Q
    ||||||||||||||||| | |||||| | ||||||||||||||||    
T  11982094 cacaaccttataagtgtcgcttgaattaacataaccaaacacaaa 11982138  T

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Target: scaffold0128 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 8250 - 8202
Alignment:
Q  143 ttaaggccacaaccttataagtgttggttgaatcatcataaccaaacac 191  Q
    ||||||||||||| |||||||||| |||||||  |||||||||||||||    
T  8250 ttaaggccacaactttataagtgtcggttgaactatcataaccaaacac 8202  T

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Target: scaffold0064 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 23855 - 23813
Alignment:
Q  152 caaccttataagtgttggttgaatcatcataaccaaacacaaa 194  Q
    |||||||||||||||||||| |||  |||||||||||||||||    
T  23855 caaccttataagtgttggttaaattctcataaccaaacacaaa 23813  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 39379425 - 39379467
Alignment:
Q  46 aaacttttaatacttctccaaacattatcacccaaactaaaaa 88  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||    
T  39379425 aaactttcaatatttctccaaacattatcacccaaactgaaaa 39379467  T

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