View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11641_high_20 (Length: 259)

Name: NF11641_high_20
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11641_high_20
NF11641_high_20
[»] chr2 (2 HSPs)
chr2 (11-238)||(31481270-31481497)
chr2 (108-149)||(7703038-7703079)
[»] chr8 (2 HSPs)
chr8 (38-115)||(21533010-21533087)
chr8 (108-191)||(17633927-17634010)
[»] chr7 (3 HSPs)
chr7 (109-235)||(8248550-8248676)
chr7 (108-191)||(26618604-26618687)
chr7 (108-149)||(26620568-26620609)
[»] chr6 (2 HSPs)
chr6 (115-233)||(30129180-30129295)
chr6 (112-225)||(1943095-1943211)
[»] chr1 (1 HSPs)
chr1 (108-149)||(39367600-39367641)
[»] chr4 (2 HSPs)
chr4 (108-149)||(37744547-37744588)
chr4 (108-149)||(37750455-37750496)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 31481497 - 31481270
Alignment:
Q  11 agatggacatcacatagatgtagacagttgtgcatatgtaattaatttgcattaatgtttttagtgcattgttgttaaatttaatctttcaatactattt 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31481497 agatgaacatcacatagatgtagacagttgtgcatatgtaattaatttgcattaatgtttttagtgcattgttattaaatttaatctttcaatactattt 31481398  T
Q  111 ttgttctcacattccttctaaatacgtgtagctagaagaannnnnnngcttcaagtgaagctaataaagatggtgttgcaaccttgttaaacaattgaaa 210  Q
    ||||||||||||||||||||||||| ||||| ||||||||       |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31481397 ttgttctcacattccttctaaatacttgtagttagaagaatttttttgcttaaagtgaagctaataaagatggtgttgcaaccttgttaaacaattgaaa 31481298  T
Q  211 ttacaatcaagaagatttttgttgcgtt 238  Q
    ||||||||||||||||||||||||||||    
T  31481297 ttacaatcaagaagatttttgttgcgtt 31481270  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 7703079 - 7703038
Alignment:
Q  108 tttttgttctcacattccttctaaatacgtgtagctagaaga 149  Q
    ||||||||||||| |||||||||||||| || ||||||||||    
T  7703079 tttttgttctcacgttccttctaaatacttgcagctagaaga 7703038  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 21533010 - 21533087
Alignment:
Q  38 ttgtgcatatgtaattaatttgcattaatgtttttagtgcattgttgttaaatttaatctttcaatactatttttgtt 115  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||    
T  21533010 ttgtgcatatgtaattaatatgtattaatgtttttagtgcatagttgttaaatttaatctttcaacactatttctgtt 21533087  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 17633927 - 17634010
Alignment:
Q  108 tttttgttctcacattccttctaaatacgtgtagctagaagaannnnnnngcttcaagtgaagctaataaagatggtgttgcaa 191  Q
    |||||||||||||||||||||||||||| || ||||||||||        ||||||||||||| ||  ||||||||||||||||    
T  17633927 tttttgttctcacattccttctaaatacttgcagctagaagatttttgttgcttcaagtgaagttatgaaagatggtgttgcaa 17634010  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 235
Target Start/End: Complemental strand, 8248676 - 8248550
Alignment:
Q  109 ttttgttctcacattccttctaaatacgtgtagctagaagaannnnnnngcttcaagtgaagctaataaagatggtgttgcaaccttgttaaacaattga 208  Q
    |||| |||||||||| ||||||||||| || ||||||||||        ||| |||||||||||| |||||||| | |||||| ||||| ||||| ||||    
T  8248676 ttttattctcacattacttctaaatacttgcagctagaagatatttgttgctccaagtgaagctattaaagatgttattgcaaacttgtcaaacagttga 8248577  T
Q  209 aattacaatcaagaagatttttgttgc 235  Q
    || ||||| |||||||| || ||||||    
T  8248576 aagtacaaccaagaagaattatgttgc 8248550  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 26618604 - 26618687
Alignment:
Q  108 tttttgttctcacattccttctaaatacgtgtagctagaagaannnnnnngcttcaagtgaagctaataaagatggtgttgcaa 191  Q
    |||||| ||||||||||||||||||||| || ||||||||||        | |||||||||| |||  ||||||||||||||||    
T  26618604 tttttgctctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaactatgaaagatggtgttgcaa 26618687  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 26620568 - 26620609
Alignment:
Q  108 tttttgttctcacattccttctaaatacgtgtagctagaaga 149  Q
    |||||| ||||||||||||||||||||| || ||||||||||    
T  26620568 tttttgctctcacattccttctaaatacttgcagctagaaga 26620609  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 30129180 - 30129295
Alignment:
Q  115 tctcacattccttctaaatacgtgtagctagaagaannnnnnngcttcaagtgaagctaataaagatggtgttgcaaccttgttaaacaattgaaattac 214  Q
    ||||||||||||||||||||| || ||||||||||         ||| | ||||||||| ||||||||||||||||| ||||| |||||||||||| |||    
T  30129180 tctcacattccttctaaatacttgcagctagaagattttgtta-ctttaggtgaagctattaaagatggtgttgcaagcttgtcaaacaattgaaagtac 30129278  T
Q  215 aatcaagaagatttttgtt 233  Q
    || ||  ||||||||||||    
T  30129279 aacca--aagatttttgtt 30129295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 1943211 - 1943095
Alignment:
Q  112 tgttctcacattccttctaaatacgtgtagctagaagaannnnnnngcttcaagtgaagctaataa---agatggtgttgcaaccttgttaaacaattga 208  Q
    |||||||||||||||||||||||| ||  |||||||||        ||| |||||||| ||| |||   |||||||||||||| ||| | ||||||||||    
T  1943211 tgttctcacattccttctaaatacttgcggctagaagatatttgttgctccaagtgaaactattaattaagatggtgttgcaaacttatcaaacaattga 1943112  T
Q  209 aattacaatcaagaaga 225  Q
    || ||||| ||||||||    
T  1943111 aagtacaaccaagaaga 1943095  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 39367600 - 39367641
Alignment:
Q  108 tttttgttctcacattccttctaaatacgtgtagctagaaga 149  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  39367600 tttttgttctcacattccttctaaatacttgtagctagaaga 39367641  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 37744547 - 37744588
Alignment:
Q  108 tttttgttctcacattccttctaaatacgtgtagctagaaga 149  Q
    |||||||||||||||||||||||||||| || | ||||||||    
T  37744547 tttttgttctcacattccttctaaatacttgcacctagaaga 37744588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 37750455 - 37750496
Alignment:
Q  108 tttttgttctcacattccttctaaatacgtgtagctagaaga 149  Q
    |||||||||||||||||||||||||||| || | ||||||||    
T  37750455 tttttgttctcacattccttctaaatacttgcaactagaaga 37750496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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