View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11641_high_21 (Length: 255)

Name: NF11641_high_21
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11641_high_21
NF11641_high_21
[»] chr6 (7 HSPs)
chr6 (18-255)||(2429351-2429588)
chr6 (31-255)||(2574942-2575160)
chr6 (61-255)||(2647260-2647454)
chr6 (130-255)||(2445769-2445894)
chr6 (98-255)||(2679743-2679900)
chr6 (33-255)||(2602956-2603176)
chr6 (209-255)||(2615484-2615530)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 2429588 - 2429351
Alignment:
Q  18 ttccacactgttgagatagaatcaaagttgtgtttgttaagctagagagggagagagtgagaaccttattgacatcatggacaaaattgctgcttgatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2429588 ttccacactgttgagatagaatcaaagttgtgtttgttaagctagagagggagagagtgagaaccttattgacatcatggacaaaattgctgcttgatgt 2429489  T
Q  118 tccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  2429488 tccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccaaaaaaaccaaaagcc 2429389  T
Q  218 atgaaaaaccaatcaagaacatcagcatgcatgaaaat 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2429388 atgaaaaaccaatcaagaacatcagcatgcatgaaaat 2429351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 255
Target Start/End: Original strand, 2574942 - 2575160
Alignment:
Q  31 agatagaatcaaagttgtgtttgttaagctagagagggagagagtgagaaccttattgacatcatggacaaaattgctgcttgatgttccagaagcacta 130  Q
    |||||||||| ||||||||| |||||||      || ||||||| || |||||||||||  ||||||||||||||| |||||||||  ||||||||||||    
T  2574942 agatagaatccaagttgtgtgtgttaag------agagagagagagaaaaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcacta 2575035  T
Q  131 ccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagccatgaaaaaccaat 230  Q
    |||| ||||||||||| | ||| ||  ||||||||||  ||||| ||    |||||||||||||| |  ||       |||||| |||||||||||||||    
T  2575036 ccaatagagttcataagtctgcctgcaataaacaacaacaaaggaactgatatgccatcaccaatggaaccaatcaaaccaaaaaccatgaaaaaccaat 2575135  T
Q  231 caagaacatcagcatgcatgaaaat 255  Q
    | |||||||| ||||||||||||||    
T  2575136 ctagaacatctgcatgcatgaaaat 2575160  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 61 - 255
Target Start/End: Original strand, 2647260 - 2647454
Alignment:
Q  61 agagagggagagagtgagaaccttattgacatcatggacaaaattgctgcttgatgttccagaagcactaccaacagagttcataattttgcttgtgata 160  Q
    |||||| ||||||| |||||||| || ||  | ||||||||||||| |||||||||| ||||||  | |||||| ||||||||||| |||||||| ||||    
T  2647260 agagagagagagagagagaacctcatagatgttatggacaaaattgttgcttgatgtgccagaaatagtaccaatagagttcataagtttgcttgagata 2647359  T
Q  161 aacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaat 255  Q
    ||||| |  |||||   ||| || ||||||||||| || ||       ||||||||||| || || |||||||||||||||||||||||||||||    
T  2647360 aacaaaagcaaaggagtcattattccatcaccaatggctccaaacaaaccaaaagccattaagaaacaatcaagaacatcagcatgcatgaaaat 2647454  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 255
Target Start/End: Complemental strand, 2445894 - 2445769
Alignment:
Q  130 accaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagccatgaaaaaccaa 229  Q
    ||||| |||||||||||||||||||||||| | |||||| | ||||| ||| ||||||||||||||||||||       |||||| |||| ||||||||     
T  2445894 accaatagagttcataattttgcttgtgattagcaacaccatagggatcattatgccatcaccaatagccccaaatgaaccaaaaaccattaaaaaccag 2445795  T
Q  230 tcaagaacatcagcatgcatgaaaat 255  Q
    || |||||||||||||||||||||||    
T  2445794 tctagaacatcagcatgcatgaaaat 2445769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 2679743 - 2679900
Alignment:
Q  98 acaaaattgctgcttgatgttccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatag 197  Q
    ||||||||| |||||||||  ||||||  | |||||| ||||||||||||| |||||||||||||||| || |||||   ||| |  ||||||||||| |    
T  2679743 acaaaattggtgcttgatgagccagaaatagtaccaatagagttcataattctgcttgtgataaacaaaaccaaaggagtcattagtccatcaccaatgg 2679842  T
Q  198 ccccnnnnnnnccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaat 255  Q
    | ||       ||||||||||||||||| |||||||||||||||||||||||||||||    
T  2679843 caccaatcaaaccaaaagccatgaaaaaacaatcaagaacatcagcatgcatgaaaat 2679900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 2602956 - 2603176
Alignment:
Q  33 atagaatcaaagttgtgtttgttaagctagagagggagagagtgagaaccttattgacatcatggacaaaattgctgcttgatgttccagaagcactacc 132  Q
    |||||||| |||||||  |||||||   |||||| || |||| | ||||||||||||  ||||| ||||||||| || ||||||| |||||||||| |||    
T  2602956 atagaatccaagttgtacttgttaaa--agagagagatagagagggaaccttattgatgtcatgaacaaaattgttgtttgatgtgccagaagcaccacc 2603053  T
Q  133 aacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagccatgaaaaaccaatca 232  Q
    || ||||||||||| | ||| ||  ||||||||||  ||||| ||    |||||||||||||| |  ||       |||||| ||||||||||||||||     
T  2603054 aatagagttcataagtctgcctgcaataaacaacaacaaaggaactgatatgccatcaccaatggaaccaatcaaaccaaaaaccatgaaaaaccaatct 2603153  T
Q  233 agaacatcagcatgcatgaaaat 255  Q
    |||||||| ||||||||||||||    
T  2603154 agaacatctgcatgcatgaaaat 2603176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 2615530 - 2615484
Alignment:
Q  209 ccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaat 255  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  2615530 ccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaat 2615484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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