View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11641_low_10 (Length: 465)
Name: NF11641_low_10
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 32960850 - 32961284
Alignment:
| Q |
18 |
tttttgagcttggatagtcaccatgaaggtggaagaaaaatggacaagtttaagagaagcttcactttacctacaagagtggcttcatcatcttcatcta |
117 |
Q |
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| T |
32960850 |
tttttgagcttggatagtcaccatgaaggtggaagaaaaatggacaagtttaagagaagcttcactttacctacaagagtggcttcatcatcttcatcta |
32960949 |
T |
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| Q |
118 |
cttcaatggatcatcatcaacaacaacaaggtgtggagtataggaattcagaaggaggaggtatgtactcagatgttatggagacctttatggagtgaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32960950 |
cttcaatggatcatcatcaacaacaacaaggtgtggagtataggaattcagaaggaggaggtatgtactcagatgttatggagacctttatggagtaaat |
32961049 |
T |
|
| Q |
218 |
gtttggaagaaaaattagaatttgtatctaggaagaaaagctagctatgttcctttttcatgtgtttgnnnnnnncactattgtatctttgtgttttctt |
317 |
Q |
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| T |
32961050 |
gtttggaagaaaaattagaatttgtatctaggaagaaaagctagctatgttcctttttcatgtgtttgtttttttcactattgtatctttgtgttttctt |
32961149 |
T |
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| Q |
318 |
ctgtattcctcttaatgagactttattaatgatcatttgtttctttcttttacttcaattagacataaagtttacatgatgttttactttctatagcatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32961150 |
ctgtattcctcttaatgagactttattaatgatcatttgtttctttcttttacttcaattagacataaagtttacatgatgttttactttctatagcatt |
32961249 |
T |
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| Q |
418 |
tttattgggtcatcattgcgtgtgtttgttcttct |
452 |
Q |
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| T |
32961250 |
tttattgggtcatcattgtgtgtgtttgttcttct |
32961284 |
T |
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