View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11641_low_11 (Length: 424)
Name: NF11641_low_11
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 64 - 410
Target Start/End: Original strand, 11107929 - 11108276
Alignment:
| Q |
64 |
ttgtgcatggaattttgcacgaaaa-aatccaagattgaaaacgcaagcggctatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcac |
162 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11107929 |
ttgtgcatcgaattttgcacgaaaaaaatccaagattgaaaacgcaagcggttatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcac |
11108028 |
T |
|
| Q |
163 |
atcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcagtcgcagcagaatagtagtactgagagattccgagtcgttctctccgat |
262 |
Q |
| |
|
||||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| || |||| || || | || ||||||||||| |
|
|
| T |
11108029 |
atcggaagaattgcacccggtgttacaattcatcgatttgaagcctgttcagtcgcagcagaatagtgctatcgagatataccaactctttctctccgat |
11108128 |
T |
|
| Q |
263 |
ggtttacattatgaacaaggaatgcttgctacacagaagaatgagttggttcataatggaaggttgcagaaaggctccattgttaagcttactcagttca |
362 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11108129 |
ggtttgcattatgaacatggaatgcttgctaaacagaagaatgagttggttcataatggaaggttgcagaaaggttccattgttaagcttactcagttca |
11108228 |
T |
|
| Q |
363 |
cctgtaaccatgttcagactcgcaagtaagtttcttcttttgcatgcc |
410 |
Q |
| |
|
|| ||| ||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
11108229 |
tctataaacatgttcggactcgcaagtaagcttcttcttttgcatgcc |
11108276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 115 - 410
Target Start/End: Original strand, 11116179 - 11116474
Alignment:
| Q |
115 |
tatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcag |
214 |
Q |
| |
|
|||||| |||||||| || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11116179 |
tatggccgtgaatctaactcagggtgcgatagtaacgatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcag |
11116278 |
T |
|
| Q |
215 |
tcgcagcagaatagtagtactgagagattccgagtcgttctctccgatggtttacattatgaacaaggaatgcttgctacacagaagaatgagttggttc |
314 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11116279 |
tcgcagcagaatagtggtactgagagataccgagtcgttctctccgatggtttgcattatcaacaaggaatgctcgctacacagaagaatgagttggttc |
11116378 |
T |
|
| Q |
315 |
ataatggaaggttgcagaaaggctccattgttaagcttactcagttcacctgtaaccatgttcagactcgcaagtaagtttcttcttttgcatgcc |
410 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11116379 |
attctggaaggttgcagaaaggttccattgttaagctttctcagttcatctgtaacgttgttcagaatcgcaagtaagtttcttcttttgcatgcc |
11116474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 108 - 414
Target Start/End: Original strand, 11108966 - 11109275
Alignment:
| Q |
108 |
aagcggctatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagct |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| || | || ||||| ||||||||||||||||||||||| |
|
|
| T |
11108966 |
aagcggttatggctgtgaatctgacacaaggtgcgataatgaagatgtgtttcacatcggaggaaatccaaccggttttacaagttatcgatttgaagct |
11109065 |
T |
|
| Q |
208 |
tgttcagtcgcagcagaatagtagtactgagagattccgagtcgttctctccgatggtttacattatgaacaaggaatgcttgctacacagaagaatgag |
307 |
Q |
| |
|
| | ||||||||||| ||||| | |||| | | | || | |||||||||||||||||| ||||||| ||||||||| || || ||||| ||| || |
|
|
| T |
11109066 |
tttgcagtcgcagcaaaatagcactactaaaatgtaccaactcgttctctccgatggttcacattataaacaaggaacactctctgttcagaaaaataag |
11109165 |
T |
|
| Q |
308 |
ttggttcataatggaaggttgcagaaaggctccattgttaagcttactcagttcacctgtaaccatgt---tcagactcgcaagtaagtttcttcttttg |
404 |
Q |
| |
|
||| ||||| |||||||||||||||||| |||||||||||||| | | || ||| ||||||| |||| ||||| || |||||||||||||||||||| |
|
|
| T |
11109166 |
ttgattcattctggaaggttgcagaaaggttccattgttaagctcaatgagatcatctgtaacgatgttaatcagaatctcaagtaagtttcttcttttg |
11109265 |
T |
|
| Q |
405 |
catgcctttg |
414 |
Q |
| |
|
||| |||||| |
|
|
| T |
11109266 |
cattcctttg |
11109275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 115 - 406
Target Start/End: Original strand, 11111701 - 11111992
Alignment:
| Q |
115 |
tatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaagcttgttcag |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| | | | ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
11111701 |
tatggctgtgaatctgacccaaggtgcgataataacaatgtgtttcacatcggaagtatgggaaccggtgttacaagttttcgatatgaagcttgttcag |
11111800 |
T |
|
| Q |
215 |
tcgcagcagaatagtagtactgagagattccgagtcgttctctccgatggtttacattatgaacaaggaatgcttgctacacagaagaatgagttggttc |
314 |
Q |
| |
|
||||||||||||| | ||||||| | |||| | ||||||||||||||||| ||||| ||||||||||||| | | |||||||| | ||||||| |
|
|
| T |
11111801 |
tcgcagcagaataacactactgagccgtaccgactagttctctccgatggtttgtattatcaacaaggaatgctcgttgtgcagaagaaccatttggttc |
11111900 |
T |
|
| Q |
315 |
ataatggaaggttgcagaaaggctccattgttaagcttactcagttcacctgtaaccatgttcagactcgcaagtaagtttcttcttttgca |
406 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| |||| ||| ||| || |||||| || | |||||||||||||||||||||| |
|
|
| T |
11111901 |
attctggaaggttgcagaaaggttccattgttaagctctctcatttctattgtgacgatgttctgaataacaagtaagtttcttcttttgca |
11111992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University