View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11641_low_12 (Length: 381)
Name: NF11641_low_12
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 46084815 - 46085167
Alignment:
| Q |
10 |
gcacagaagagtgagattacaaagtgaatgcaacacttacagtcgccttgttctgaatgttgcgagcacggtttgagtattttaaagtgttcaatgtctc |
109 |
Q |
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| T |
46084815 |
gcacagaagagtgagattacaaagtgaatacaacacttacagtcgccttgttctgaatgttgcgagcacggtttgagtattttaaagtgttcaatgtctc |
46084914 |
T |
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| Q |
110 |
ttcagcatttgagtcagcaggactaacacatgctgtaacataccgaacaagtaagaaaagacatttaatgatagaaagtaccaaaatgtcacaactttct |
209 |
Q |
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| T |
46084915 |
ttcagcatttgagtcagcaggactaacacatgctgtaacatacccaacaagtaagaaaagacatttaatgatagaaagtaccaaaatgtcacaactttct |
46085014 |
T |
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| Q |
210 |
ccttatacctatcatcactgttttgctgtttcctccaagagaatcctacatatacatcatccaagtacatgtcatgataagaaatcaattcatgtggtag |
309 |
Q |
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| T |
46085015 |
cgttatacctatcatcactgttttgctgtttcctccaagagaatcctacatatacatcatccaagtacatgtcatgataagaaattaattcatgtggtag |
46085114 |
T |
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| Q |
310 |
atattttacactgaatactatataattaaagcttttcagtaacatgtggcaat |
362 |
Q |
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| T |
46085115 |
atattttacactgaatactatataattaaagcttttcagtaacatgtggcaat |
46085167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 27957672 - 27957584
Alignment:
| Q |
57 |
ttgttctgaatgttgcgagcacggtttgagtattttaaagtgttcaatgtctcttcagcatttgagtcagcaggactaacacatgctgt |
145 |
Q |
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| T |
27957672 |
ttgttctgtatgttccgcgcacgatttgcatattttaacgtatttaacgtctcttcagcattggtgtctgcaggactaacacatgctgt |
27957584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 27957494 - 27957451
Alignment:
| Q |
215 |
tacctatcatcactgttttgctgtttcctccaagagaatcctac |
258 |
Q |
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| T |
27957494 |
tacctatcatcaccgttttgctgttccctccaagagaatcctac |
27957451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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