View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11641_low_16 (Length: 277)
Name: NF11641_low_16
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 32440565 - 32440295
Alignment:
| Q |
7 |
tgagaagaaatatgcgtcctttcgatgtcaatttaatgaaactcaacggagaaggaggttaagaatttgagttttgaaactaaaacatgcataagagatt |
106 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32440565 |
tgagaagaaatatgcgccctttcgatgtcaat--aatgaaactcaacggagaaggaggttaagaatttgagttttgaaactaaaacatgcataagagatt |
32440468 |
T |
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| Q |
107 |
gaaacctatcagaatgtagtctccaatacgtagccnnnnnnnntgtaattttcggtaagttttgacatttgaatgaaacaaaattgctgcaaga-nnnnn |
205 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
32440467 |
gaaacctatcagaatgtagtctccaatacgtagcgaaaaaaaatgtaattttcggtaagttttgacatttgaacgaaacaaaattggtgcaagatttttt |
32440368 |
T |
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| Q |
206 |
nnncaaggc-aaaaactcccgatcttgatatgagcatttttgggtgtctcagagcaacacagagagggagcaa |
277 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
32440367 |
tttcaagacaaaaaactcccgatcttgatatgagcatttttgggtgtctcagagtaacacggagagggagcaa |
32440295 |
T |
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