View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11641_low_18 (Length: 265)
Name: NF11641_low_18
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 35343514 - 35343276
Alignment:
| Q |
6 |
cgcacgttggaataatggccaaataaatggatgccattttggtttttacgctgtctatgtgaaaagtgtatgttaaaaagaagaaaatggaattagttat |
105 |
Q |
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| T |
35343514 |
cgcactttggaataatggccaaagaaatggatgccattttggtttttacgctggctatgtgaaaagtgtatgttaaaaagaagaaaatggaattagttat |
35343415 |
T |
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| Q |
106 |
atgatatgctaagatagttgtgtgagttgagttaggattagagagttttatgttatatataactagaagagaacttgttgagtaattccaccacaattaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35343414 |
atgatatgctaagatagttgtgtgagttgagttaggattagagagttttgtgttatatataactagaagagaacttgttgagttattccaccacaattaa |
35343315 |
T |
|
| Q |
206 |
accacacaagaagtgtgtatgtttacttaaggtgtgagc |
244 |
Q |
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| T |
35343314 |
accacacaagaagtgtgtatgtttacttaaggtgtgagc |
35343276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 35348204 - 35347952
Alignment:
| Q |
7 |
gcacgttggaataatggccaaataaatggatgccattttggtttttacgctgtctatgtgaaaag-tgtatgttaaaaagaagaaaatggaattagttat |
105 |
Q |
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|||| ||||| |||| |||||| |||||||||||||||| |||||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||| |
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| T |
35348204 |
gcactttggagtaatagccaaagaaatggatgccatttttgtttttacgctggctatgttaaaaaatgtatgttataaagaagaaaatggaattagttat |
35348105 |
T |
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| Q |
106 |
atgatatgctaagatagttgtgtgagt-----------tgagttaggattagagagttt-tatgttatatataactagaagagaacttgttgagtaattc |
193 |
Q |
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| T |
35348104 |
atgatatgctaaggtagttgtgtgagttgagctgtgtttgagttaggattggagagtttgtgtgttatatataacaagaagagaagttgttgagtagttc |
35348005 |
T |
|
| Q |
194 |
caccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcat |
246 |
Q |
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| T |
35348004 |
taacacaagcaaaccacacaagaagtgtgtaagtttgcttaaggtatgagcat |
35347952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 35355770 - 35356024
Alignment:
| Q |
7 |
gcacgttggaataatggccaaataaatggatgccattttggtttttacgctgtctatgtgaaaagtgtatgtt-aaaaagaagaaaatggaattagttat |
105 |
Q |
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|||| ||||| ||||||||| | |||| ||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
35355770 |
gcactttggagtaatggccatagaaattgatgccattttggttttgacgcttgctatgtaaaaagtgtatgttggaaaagaagaaaatggaattagttat |
35355869 |
T |
|
| Q |
106 |
atgatat--gctaagatagttgtgtgag-----------ttgagttaggattagagagttt-tatgttatatataactagaagagaacttgtt-gagtaa |
190 |
Q |
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||||||| ||||| |||||||||||| ||||||||||||| |||||||| | ||||||||||||| | ||||| ||||| |||| |
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| T |
35355870 |
atgatatacactaaggtagttgtgtgagttgagttgtgtttgagttaggattggagagtttgtgtgttatatataacaaaaagag-tgttgttggagttg |
35355968 |
T |
|
| Q |
191 |
ttccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcat |
246 |
Q |
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||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35355969 |
ttctaacacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcat |
35356024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 246
Target Start/End: Original strand, 35374536 - 35374652
Alignment:
| Q |
132 |
ttgagttaggattagagagttt-tatgttatatataactagaagagaacttgttg-agtaattccaccacaattaaaccacacaagaagtgtgtatgttt |
229 |
Q |
| |
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||||||||||||| |||||||| | ||||||||||||| | ||||| |||||| ||| ||| | ||||| |||||||||||||||||||||||||| |
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| T |
35374536 |
ttgagttaggattggagagtttgtgtgttatatataacaaaaagagttgttgttggagttgttctaacacaagcaaaccacacaagaagtgtgtatgttt |
35374635 |
T |
|
| Q |
230 |
acttaaggtgtgagcat |
246 |
Q |
| |
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|||||||||||||||| |
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| T |
35374636 |
gcttaaggtgtgagcat |
35374652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 35351228 - 35351299
Alignment:
| Q |
30 |
aaatggatgccattttggtttttacgctgtctatgtgaaaagtgtatgttaaaaagaagaaaatggaattag |
101 |
Q |
| |
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|||||||||||||||||||||| |||||| |||||||||||| | | || ||||||||||||||||||||| |
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| T |
35351228 |
aaatggatgccattttggttttgacgctgattatgtgaaaagtttgtatttaaaagaagaaaatggaattag |
35351299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 35364638 - 35364688
Alignment:
| Q |
196 |
ccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcat |
246 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35364638 |
ccacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcat |
35364688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 35371815 - 35371865
Alignment:
| Q |
196 |
ccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcat |
246 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35371815 |
ccacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcat |
35371865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 35340806 - 35340976
Alignment:
| Q |
30 |
aaatggatgccattttggtttttacgctgtctatgtgaaaagtgtatgttaaaaagaagaaaatggaattagtta------tatgatatgctaagata-- |
121 |
Q |
| |
|
||||||||| |||||||||| | | | || |||||| |||||||| || | |||||||||||||||||||| ||| |||||||||||| | || |
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| T |
35340806 |
aaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaattaattagcaatatatgatatgctagggtaca |
35340905 |
T |
|
| Q |
122 |
------gttgtgtgagttgagttaggattagagagttt-tatgttatatataactagaagagaacttgttg |
185 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| | || |||||||||| |||||||||||||||| |
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| T |
35340906 |
caagaagttgtgtgagttgagttagtattggagagtttgtgtgatatatataacaagaagagaacttgttg |
35340976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 35346222 - 35346303
Alignment:
| Q |
85 |
gaagaaaatggaattagttatatgatatgctaagatagttgtgtgagttgagttaggattagagagttt-tatgttatatata |
166 |
Q |
| |
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|||||||||| |||||| ||||| |||||||| |||||||||||| |||||||||||| |||||||| | ||||||||||| |
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| T |
35346222 |
gaagaaaatg-aattagctatattggatgctaagttagttgtgtgagctgagttaggattggagagtttgtgtgttatatata |
35346303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 35335792 - 35335881
Alignment:
| Q |
157 |
gttatatataactagaagagaacttgttgagtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcat |
246 |
Q |
| |
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||||||||||||||||||| || ||||||| ||| | ||||| ||||||| || ||||||||| ||||| |||||||||||||||| |
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| T |
35335792 |
gttatatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaagtgtgtgtgtttgcttaaggtgtgagcat |
35335881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 35368331 - 35368372
Alignment:
| Q |
97 |
attagttatatgatatgctaagatagttgtgtgagttgagtt |
138 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
35368331 |
attagttatattatatgctaaggtagttgtgtgagttgagtt |
35368372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 35368411 - 35368488
Alignment:
| Q |
159 |
tatatataactagaagagaacttgttg-agtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaa |
235 |
Q |
| |
|
||||||||||||||||| || |||||| ||| ||| | ||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
35368411 |
tatatataactagaagataagttgttggagttgttctaacacaagcaaaccacacaagaagtgtgtatgtttgcttaa |
35368488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 35346345 - 35346396
Alignment:
| Q |
197 |
cacaattaaaccacacaagaa--gtgtgtatgtttacttaaggtgtgagcat |
246 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
35346345 |
cacaagtaaaccacacaagaagtgtgtgtgtgtttgcttaaggtgtgagcat |
35346396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 35364516 - 35364575
Alignment:
| Q |
81 |
aaaagaagaaaatggaa--ttagttatatgatatgctaagatagttgtgtgagttgagtt |
138 |
Q |
| |
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|||||| |||||||||| || ||||||||| |||||||| ||||| ||||||||||||| |
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|
| T |
35364516 |
aaaagatgaaaatggaaattttgttatatgagatgctaaggtagttatgtgagttgagtt |
35364575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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