View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11641_low_19 (Length: 264)
Name: NF11641_low_19
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 1548023 - 1548276
Alignment:
| Q |
1 |
tgcttattctaattctctgcttctgatcacaggttgtgatggttggtcttgacaatgctggcaaaacaactatactctataagcttcaaattggaaaagt |
100 |
Q |
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| T |
1548023 |
tgcttattctaattctctgcttctgatcacaggttgtgatggttggtcttgacaatgctggcaaaacaactatactctataagcttcaaattggaaaagt |
1548122 |
T |
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| Q |
101 |
tgtatctactattcctacaattggtgtgtctaataatcttcataattgactttccagtttaaaaactttctttagattgatcatgattcatcttgcgttg |
200 |
Q |
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| T |
1548123 |
tgtatctactattcctacaattggtgtgtctaataatcttcataattgactttccagtttaaaaactttctttagattgatcatgattcatcttgcgttg |
1548222 |
T |
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| Q |
201 |
catccatttcatgtgttgtttctgcgttggtagctcaaggatgttacgtctgtg |
254 |
Q |
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| T |
1548223 |
catccatttcatgtgttgtttctgcgttggtagctcaaggatgttacgtctgtg |
1548276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 1544162 - 1544423
Alignment:
| Q |
1 |
tgcttattctaattctctgcttctgatcacaggttgtgatggttggtcttgacaatgctggcaaaacaactatactctataagcttcaaattggaaaagt |
100 |
Q |
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| T |
1544162 |
tgcttattctaattctctgcttctgatcacaggttgtgatggttggtcttgacaatgctggcaaaacaactatactctataagcttcaaattggaaaagt |
1544261 |
T |
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| Q |
101 |
tgtatctactattcctacaattggtgtgtctaataatcttcat-aattgactttcca--------gtttaaaaactttctttagattgatcatgattcat |
191 |
Q |
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| T |
1544262 |
tgtatctactattcctactgttggtgtgtctaataatcttcataaattgactttccaattttattgtttaaaaactttctttggattgat-atgattcat |
1544360 |
T |
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| Q |
192 |
cttgcgttgcatccatttcatgtgttgtttctgcgttggtagctcaaggatgttacgtctgtg |
254 |
Q |
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| T |
1544361 |
cttgcattgcatccatttcatgtgttgtttctgcgttggtagctcaaggatgttaggtctgtg |
1544423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 1540287 - 1540383
Alignment:
| Q |
29 |
acaggttgtgatggttggtcttgacaatgctggcaaaacaactatactctataagcttcaaattggaaaagttgtatctactattcctacaattggt |
125 |
Q |
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| T |
1540287 |
acaggttgtgatgcttggtcttgatgctgctggcaaaactactattctctacaaacttcacattggtgaagttttatctactgttcccactattggt |
1540383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 416035 - 415972
Alignment:
| Q |
63 |
aaaacaactatactctataagcttcaaattggaaaagttgtatctactattcctacaattggtg |
126 |
Q |
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| T |
416035 |
aaaacaactatattgtacaagctccacattggagaagttatatctactgttcctacaattggtg |
415972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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