View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11641_low_2 (Length: 892)

Name: NF11641_low_2
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11641_low_2
NF11641_low_2
[»] chr1 (15 HSPs)
chr1 (11-684)||(35264469-35265144)
chr1 (681-877)||(35265194-35265392)
chr1 (203-411)||(35272032-35272235)
chr1 (461-615)||(35272253-35272409)
chr1 (779-877)||(35272856-35272954)
chr1 (14-215)||(35271802-35272004)
chr1 (782-876)||(45534344-45534438)
chr1 (804-873)||(35228405-35228474)
chr1 (782-877)||(45526140-45526235)
chr1 (826-876)||(35476977-35477027)
chr1 (845-877)||(35206426-35206458)
chr1 (845-877)||(35216973-35217005)
chr1 (826-877)||(35145210-35145261)
chr1 (779-865)||(35148864-35148950)
chr1 (41-82)||(35148463-35148504)
[»] chr7 (1 HSPs)
chr7 (11-343)||(36778251-36778578)


Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 11 - 684
Target Start/End: Original strand, 35264469 - 35265144
Alignment:
Q  11 catgaacatgtgtagagacaacaagacttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaa 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||    
T  35264469 catgaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagtaacaaacaaattggtcagatatttaaaaaaattggtaaaa 35264568  T
Q  111 tgatgcatccaaaaagaaataggatcggttgccgcagcaaataggatgnnnnnnnggaagtctgcagaggaagcaaaa-ccacagcgttacagaagaagg 209  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||    
T  35264569 tgatgcattcaaaaagaaataggttcggttgccgcagcaaataggatgaaaaaaaggaagtctgcagaggaagcaaaaaccacagcgttacagaagaagg 35264668  T
Q  210 atcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgatacttagctgaagtgatatggagaaaggaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35264669 atcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgatacttagctgaagtgatatggagaaaggaa 35264768  T
Q  310 ccgattccaaattctctaagtcacaaggacatcagaattttcgcaagcacttgtttgattgaacatgctttaaatttgggtttgcacccaaggtggtagc 409  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35264769 ccgattccaaattccctaagtcacaaggacatcagaattttcgcaagcacttgtttgattgaacatgctttaaatttgggtttgaacccaaggtggtagc 35264868  T
Q  410 tactagccatggattttgatatatggtatggcctataacactacaccaactattcttcactaacttggattagaaggtagcaaaagtcagttaattctta 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35264869 tactagccatggattttgatatatggtatggcctataacactacaccaactattcttcactaacttggattagaagatagcaaaagtcagttaattctta 35264968  T
Q  510 gcagatgaggaaagagcatattcaacctcttggttattctttttgaatgccctaaaa-ccatcaactgtaattgatcactaacatgggaaatagaattat 608  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35264969 gaagatgaggaaagagcatattcaacctcttagttattctttttgaatgccctaaaacccatcaactgtaattgatcactaacatgggaaatagaattat 35265068  T
Q  609 tcaagcccgtaaaaaaggatatggctctgtttggtaaaaaatagtgtaaagcttatagcggataaactagcttata 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35265069 tcaagcccgtaaaaaaggatatggctctgtttggtaaaaaatagtgtaaagcttatagcggataaactagcttata 35265144  T

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Target: chr1; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 681 - 877
Target Start/End: Original strand, 35265194 - 35265392
Alignment:
Q  681 tataacggtttgattcggcgaacaagaaacagcatctagtattgattaggagctaatcaagatatattaagaagnnnnnnnnnn--tagaaaagctaagc 778  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||             ||||||||||||||    
T  35265194 tataacggtttgattcggcgaacaagaaatagcatctagtattgattaagagctaatcaagatatattaagaaaaaaagaaagaaatagaaaagctaagc 35265293  T
Q  779 gctaacctggaatcaggcaaaggaatccagttccagtagtggttagtatcaccccaaacaattgcaagagatctagcagaaagcatgtaacactttttt 877  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35265294 gctaacctggaatcaggcaaaggaatccagttccagtagtgcttagtatcaccccaaacaattgcaagagatctagcagaaagcatgtaacactttttt 35265392  T

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Target: chr1; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 203 - 411
Target Start/End: Original strand, 35272032 - 35272235
Alignment:
Q  203 aagaaggatcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgatacttagctgaagtgatatggag 302  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||  | ||||||||||||||||||||||||||| ||||||      
T  35272032 aagaaggatcttgggtctccaagctgaacttggatgcaaaagatagttgggtgaagagcactgatatgtgttgctgatacttagctgaagtaatatgg-- 35272129  T
Q  303 aaaggaaccgattccaaattctctaagtcacaaggacatcag-aattttcgcaagcacttgtttgattgaacatgctttaaatttgggtttgcacccaag 401  Q
      |||||| ||||||||||  ||||||||||| ||||||| | |||||| |||||||||||||||| ||||| | |||| |||||||||||| |||| ||    
T  35272130 --aggaacagattccaaat--tctaagtcacagggacatcggaaatttttgcaagcacttgtttgactgaacgttctttgaatttgggtttgaacccgag 35272225  T
Q  402 gtggtagcta 411  Q
    ||||| ||||    
T  35272226 gtggttgcta 35272235  T

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Target: chr1; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 461 - 615
Target Start/End: Original strand, 35272253 - 35272409
Alignment:
Q  461 attcttcactaacttggattagaaggtagcaaaagtcagttaattcttagcagatgaggaaagagcatattcaacctcttggttattctttttgaa-tgc 559  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| || ||||||| ||     
T  35272253 attcttcactaactttgattagaagatagcaaaagtcagttaattcttagcagatgaggaaagagcacactcaacctctttgttactccttttgaattgg 35272352  T
Q  560 ccta-aaaccatcaactgtaattgatcactaacatgggaaatagaattattcaagcc 615  Q
    |||| || |||||||| |||||||||||||||||||| ||||||||| |||||||||    
T  35272353 cctagaacccatcaacggtaattgatcactaacatggtaaatagaatcattcaagcc 35272409  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 779 - 877
Target Start/End: Original strand, 35272856 - 35272954
Alignment:
Q  779 gctaacctggaatcaggcaaaggaatccagttccagtagtggttagtatcaccccaaacaattgcaagagatctagcagaaagcatgtaacactttttt 877  Q
    ||||||||||||||||||| || |||||||||||| ||| |  ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35272856 gctaacctggaatcaggcatagaaatccagttccaatagcgtctatcatcaccccaaacaattgcaagagatctagcagaaagcatgtaacactttttt 35272954  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 35271802 - 35272004
Alignment:
Q  14 gaacatgtgtagagacaacaagacttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaatga 113  Q
    ||||||||||||| | |||||| ||| |||||||||||  | |||||||||||||| ||||||||||||||||  ||||||       ||||||||||||    
T  35271802 gaacatgtgtagaaataacaagtcttaaaataagaactatagctttagttgtaaagtaacaaacaaattggtctaatatttaaaaaatttggtaaaatga 35271901  T
Q  114 tgcatccaaaaagaaataggatcggttgccgcagcaaataggatgnnnnnnnggaagtctgcagaggaagc-aaaaccacagcgttacagaagaaggatc 212  Q
    ||||| |||||| | ||||| || ||||||  ||||| ||||||        | |||||||||||  |||| |||||  ||||| |||||||||||||||    
T  35271902 tgcattcaaaaatatataggttccgttgccaaagcaattaggatcaaaaaaggaaagtctgcagattaagcaaaaactgcagcgctacagaagaaggatc 35272001  T
Q  213 ttg 215  Q
    |||    
T  35272002 ttg 35272004  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 782 - 876
Target Start/End: Original strand, 45534344 - 45534438
Alignment:
Q  782 aacctggaatcaggcaaaggaatccagttccagtagtggttagtatcaccccaaacaattgcaagagatctagcagaaagcatgtaacacttttt 876  Q
    |||||||||||||||| || |||||||||||||||| ||||   ||||||||||  ||| || ||||||||||||| ||||||||||||||||||    
T  45534344 aacctggaatcaggcatagcaatccagttccagtagcggttgtcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacacttttt 45534438  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 804 - 873
Target Start/End: Original strand, 35228405 - 35228474
Alignment:
Q  804 tccagttccagtagtggttagtatcaccccaaacaattgcaagagatctagcagaaagcatgtaacactt 873  Q
    |||||||||| || |||| |||||||||||||  ||| ||||||||||||||||||||||| ||||||||    
T  35228405 tccagttccaatattggtcagtatcaccccaagtaatggcaagagatctagcagaaagcatataacactt 35228474  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 782 - 877
Target Start/End: Original strand, 45526140 - 45526235
Alignment:
Q  782 aacctggaatcaggcaaaggaatccagttccagtagtggttagtatcaccccaaacaattgcaagagatctagcagaaagcatgtaacactttttt 877  Q
    |||||||||||||||| || | ||||| |||| ||| ||| |  ||||||||||| |||    ||||||||||||| |||||||||||||||||||    
T  45526140 aacctggaatcaggcatagcagtccagatccaatagcggtcatcatcaccccaaataatgtggagagatctagcagcaagcatgtaacactttttt 45526235  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 826 - 876
Target Start/End: Original strand, 35476977 - 35477027
Alignment:
Q  826 atcaccccaaacaattgcaagagatctagcagaaagcatgtaacacttttt 876  Q
    |||||||||| |||| || ||||||||||||| ||||||||||||||||||    
T  35476977 atcaccccaagcaatggcgagagatctagcagcaagcatgtaacacttttt 35477027  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 845 - 877
Target Start/End: Original strand, 35206426 - 35206458
Alignment:
Q  845 agagatctagcagaaagcatgtaacactttttt 877  Q
    |||||||||||||||||||||||||||||||||    
T  35206426 agagatctagcagaaagcatgtaacactttttt 35206458  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 845 - 877
Target Start/End: Original strand, 35216973 - 35217005
Alignment:
Q  845 agagatctagcagaaagcatgtaacactttttt 877  Q
    |||||||||||||||||||||||||||||||||    
T  35216973 agagatctagcagaaagcatgtaacactttttt 35217005  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 826 - 877
Target Start/End: Original strand, 35145210 - 35145261
Alignment:
Q  826 atcaccccaaacaattgcaagagatctagcagaaagcatgtaacactttttt 877  Q
    ||||| |||| |||| || |||||||||||||||| ||||||||||||||||    
T  35145210 atcactccaagcaatggcgagagatctagcagaaaccatgtaacactttttt 35145261  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 779 - 865
Target Start/End: Original strand, 35148864 - 35148950
Alignment:
Q  779 gctaacctggaatcaggcaaaggaatccagttccagtagtggttagtatcaccccaaacaattgcaagagatctagcagaaagcatg 865  Q
    ||||||||||| ||||||| |  |||||||||||| ||| | |||  |||||||||| ||||    |||||||||||||||||||||    
T  35148864 gctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcatg 35148950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 35148463 - 35148504
Alignment:
Q  41 aaataagaactgcatctttagttgtaaagcaacaaacaaatt 82  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||    
T  35148463 aaataggaactgcgtctttagttgtaaggcaacaaacaaatt 35148504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 36778251 - 36778578
Alignment:
Q  11 catgaacatgtgtagagacaacaagacttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaa 110  Q
    ||||||||| |||||| | |||||| ||| ||||||||||  || |||||||||||||| |||||||||||||||| |||||||       |||||||||    
T  36778251 catgaacatatgtagaaataacaagtcttaaaataagaaccacagctttagttgtaaagtaacaaacaaattggtctgatatttaaaaaatttggtaaaa 36778350  T
Q  111 tgatgcatccaaaaagaaataggatcggttgccgcagcaaataggatgnnnnnnnggaagtctgcagaggaagcaaaacca-cagcgttacagaagaagg 209  Q
    |||||||| |||||| |||||||  ||||| || |||||| ||||||        | ||||||||||| ||||||||| |  || || ||||||||||||    
T  36778351 tgatgcattcaaaaataaataggtacggttaccacagcaattaggatcaaaaaaggaaagtctgcagatgaagcaaaagctgcaacgctacagaagaagg 36778450  T
Q  210 atcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgatacttagctgaagtgatatggagaaaggaa 309  Q
    ||| ||| ||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| ||||||||||| | |||||||||||    |||||    
T  36778451 atcctggggctccaagctgaacttggatgcaaaagatagttgggtgaagagcatggatatgtgtttctgatacttaggtaaagtgatatgg----aggaa 36778546  T
Q  310 ccgattccaaattctctaagtcacaaggacatca 343  Q
    | ||||||||||  ||||||||||| ||||||||    
T  36778547 cagattccaaat--tctaagtcacagggacatca 36778578  T

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