View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11641_low_20 (Length: 263)
Name: NF11641_low_20
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 1865214 - 1865452
Alignment:
| Q |
19 |
ctatcatgttgatgtgcaaacttcaaaaggcttgaatctaaaaaatattctacaaggtgtagattcaagtttatctaataataaaaatggtggatcatca |
118 |
Q |
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| T |
1865214 |
ctatcatgttgatgtgcaaacttcaaaaggcttgaatctaaaaaatattctacatggtgtagattcaagtttatctaatactaaaaatggtggatcatca |
1865313 |
T |
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| Q |
119 |
tccggtattattgatatgtcttttcatggagatatatcaaatgtgtcgacttataatactcaaaatacatacatgagtctacaacaaggaatcagt--tg |
216 |
Q |
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| T |
1865314 |
tccggtattattgatatgtcttttcatggagatatttcaaatgtgtcgacttataatactcaaaatacaaacatgagtctacaacaaggaatcagtgggg |
1865413 |
T |
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| Q |
217 |
gggcaaacatatcaaaacctggatattcaagttcttctc |
255 |
Q |
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| T |
1865414 |
gggcaaacatatcaaaacctggatattcaagttcttctc |
1865452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 64 - 255
Target Start/End: Original strand, 1865511 - 1865704
Alignment:
| Q |
64 |
tattctacaaggtgtagattcaagtttatctaataa---taaaaatggtggatcatcatccggtattattgatatgtcttttcatggagatatatcaaat |
160 |
Q |
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| T |
1865511 |
tattctacatggtgtggattcaaatttatctaacgcgtttaataatggtgggtcatcatctggtattattgatatgtcttttcatggagatatttcaagt |
1865610 |
T |
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| Q |
161 |
gtgtcgacttataatactcaaaatacatacatgagtctacaacaaggaatcagtt--ggggcaaacatatcaaaacctggatattcaagttcttctc |
255 |
Q |
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| T |
1865611 |
gtgcc---ttataatactcaaaatacaaacatgagtctacaacaaggaatcagttggggggcaaacatatcaaaacctagatattcaagttcttctc |
1865704 |
T |
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