View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11641_low_23 (Length: 254)
Name: NF11641_low_23
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 1548028 - 1547807
Alignment:
| Q |
1 |
taagcaaggaaacaaacaaatttcaaagaaaaagtagttgatggttgataccccgatctcggtattgccaaagagggtgtcaaacaacttccgaaaagct |
100 |
Q |
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| T |
1548028 |
taagcaaggaaacaaacatatttcaaagaaaaagtagttgatggttgataccccgatctcggtattgccaaagagggtgtcaaacaacttccgaaaagct |
1547929 |
T |
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| Q |
101 |
tgacccataataaccacttgaatactttcaatttcaat--tctagtttgcaatttgtgctgagaatcagaaaaagggagatagatatagatatagattga |
198 |
Q |
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| T |
1547928 |
tgacccataataaccacttgaaagctttcaatttcaattctctagtttgcaatttgtgctgagaatcagaaaaag------------agatatagattga |
1547841 |
T |
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| Q |
199 |
agtgtggactttgaattataacaaacaataatac |
232 |
Q |
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| T |
1547840 |
agtgtggactttgaattataacaaacaacaatac |
1547807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 1544167 - 1544002
Alignment:
| Q |
1 |
taagcaaggaaacaaacaaatttcaaagaaaaagtagttgatggttgataccccgatctcggtattgccaaagagggtgtcaaacaacttccgaaaagct |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1544167 |
taagcaaggaaacaaacatatttcaaagaaaaagtagttgatggttgataccctgatctcggtattgccaaagagggtgtcaaacagcttccgaaaagct |
1544068 |
T |
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| Q |
101 |
tgacccataataaccacttgaatactttcaatttcaattctagtttgcaatttgtgctgagaatca |
166 |
Q |
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| T |
1544067 |
tgacccataataaccacttgaaagctttcaatttcaatcctagtttgcagtttgtgctgagaatca |
1544002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 1540191 - 1540148
Alignment:
| Q |
65 |
ttgccaaagagggtgtcaaacaacttccgaaaagcttgacccat |
108 |
Q |
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| T |
1540191 |
ttgccaaagaatgtgtcaaacaacttccgaaaaacttgacccat |
1540148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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