View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11641_low_27 (Length: 229)

Name: NF11641_low_27
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11641_low_27
NF11641_low_27
[»] chr5 (2 HSPs)
chr5 (7-84)||(6176646-6176723)
chr5 (154-229)||(6176793-6176868)
[»] chr1 (1 HSPs)
chr1 (167-229)||(5756191-5756253)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 6176646 - 6176723
Alignment:
Q  7 ccaacaaagtcagttggtgcttctaggagttcttcaaaaagaagtagagcagctgaagttcataatttgtcagaaaag 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6176646 ccaacaaagtcagttggtgcttctaggagttcttcaaaaagaagtagagcagctgaagttcataatttgtcagaaaag 6176723  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 6176793 - 6176868
Alignment:
Q  154 gggacttgttgagcagagaagaaggagtaggatcaatgagaaaatgaaagctttacaaaatctaattccaaattct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6176793 gggacttgttgagcagagaagaaggagtaggatcaatgagaaaatgaaagctttacaaaatctaattccaaattct 6176868  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 5756191 - 5756253
Alignment:
Q  167 cagagaagaaggagtaggatcaatgagaaaatgaaagctttacaaaatctaattccaaattct 229  Q
    |||||||| ||||||| ||| ||||||||| ||||||| ||||||||| ||||||||||||||    
T  5756191 cagagaaggaggagtaagattaatgagaaattgaaagccttacaaaatttaattccaaattct 5756253  T

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