View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11641_low_28 (Length: 226)
Name: NF11641_low_28
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 13945111 - 13945313
Alignment:
| Q |
10 |
gaagcaaaggggaccacacgaagattcgttgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaaggatgtt |
109 |
Q |
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||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13945111 |
gaagcaaaggggatcacaggaagattcattgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaaggatgtt |
13945210 |
T |
|
| Q |
110 |
caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13945211 |
caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat |
13945310 |
T |
|
| Q |
210 |
gtc |
212 |
Q |
| |
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||| |
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| T |
13945311 |
gtc |
13945313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 14086300 - 14086502
Alignment:
| Q |
10 |
gaagcaaaggggaccacacgaagattcgttgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaaggatgtt |
109 |
Q |
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|
||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14086300 |
gaagcaaaggggatcacaggaagattcattgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaaggatgtt |
14086399 |
T |
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| Q |
110 |
caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086400 |
caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat |
14086499 |
T |
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| Q |
210 |
gtc |
212 |
Q |
| |
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||| |
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| T |
14086500 |
gtc |
14086502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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