View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11641_low_7 (Length: 585)
Name: NF11641_low_7
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 2373408 - 2373201
Alignment:
| Q |
6 |
agggttgagaagggttgaattccaaggttagagatgagatcgaaatcattttgtccgagactcagagaaaggaagagacattgattggaaacaggcatga |
105 |
Q |
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| T |
2373408 |
agggttgagaagggtccaattccaaggttagagatgagatcagaatcgttttgtccgagactcagagaaaagaagagacgctgattggaaacaggcatgc |
2373309 |
T |
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| Q |
106 |
cattgatttcctggattgcgaccttcagctgatagagagtggtggtgttagggtttacgtctaaggaaaacttttcgctgctcggtggaacaataaatac |
205 |
Q |
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| T |
2373308 |
cgttgaattgttggatcgcgaccttcagctgatggagagtggtggtgttagggtttacgtctaaggaaaacttttcgccgctcggtggcacaatgaatac |
2373209 |
T |
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| Q |
206 |
cattgcta |
213 |
Q |
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|||||||| |
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| T |
2373208 |
cattgcta |
2373201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 2382663 - 2382870
Alignment:
| Q |
6 |
agggttgagaagggttgaattccaaggttagagatgagatcgaaatcattttgtccgagactcagagaaaggaagagacattgattggaaacaggcatga |
105 |
Q |
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| T |
2382663 |
agggttgagaagggtccaattccaaggttagagatgagatcagaatcgttttgtccgagactcagagaaaagaagagacgctgattggaaacaggcatgc |
2382762 |
T |
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| Q |
106 |
cattgatttcctggattgcgaccttcagctgatagagagtggtggtgttagggtttacgtctaaggaaaacttttcgctgctcggtggaacaataaatac |
205 |
Q |
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| T |
2382763 |
cgttgaattgttggatcgcgaccttcagctgatggagagtggtggtgttagggtttacgtctaaggaaaacttttcgccgctcggtggcacaatgaatac |
2382862 |
T |
|
| Q |
206 |
cattgcta |
213 |
Q |
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|||||||| |
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| T |
2382863 |
cattgcta |
2382870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 2839932 - 2840136
Alignment:
| Q |
6 |
agggttgagaagggttgaattccaaggttagagatgagatcgaaatcattttgtccgagactcagagaaaggaagagacattgattggaaacaggcatga |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
2839932 |
agggttgagaagggttgaattccaaggttagagatgagatcggaatcgttttgtccgagactcagagaaaggaagagacgttgatcggaaacaggcatgc |
2840031 |
T |
|
| Q |
106 |
cattgatttcctggattgcgaccttcagctgatagagagtggtggtgttagggtttacgtctaaggaaaacttttcgctgctcggtggaacaataaatac |
205 |
Q |
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| T |
2840032 |
cattgaattgttggatcgcgaccttcagttgatggagagtggtggcgttagggtttacgtctaatgcaaacttttcgccgtttggtagcacaatcaatac |
2840131 |
T |
|
| Q |
206 |
cattg |
210 |
Q |
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||||| |
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| T |
2840132 |
cattg |
2840136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 1163464 - 1163412
Alignment:
| Q |
119 |
gattgcgaccttcagctgatagagagtggtggtgttagggtttacgtctaagg |
171 |
Q |
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|||||| |||||||| |||| ||||||||| | |||||||||||||||||||| |
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| T |
1163464 |
gattgcaaccttcaggtgatggagagtggtagcgttagggtttacgtctaagg |
1163412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 1526414 - 1526620
Alignment:
| Q |
6 |
agggttgagaagggttgaattccaaggttagagatgagatcgaaatcattttgtccgagactcagagaaaggaagagacattgattggaaacaggcatga |
105 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||| || |||| |||||||| |||||||||||||||||| |
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| T |
1526414 |
agggttgagaagggtccaattccaaggttagagatgagatcggaatcgttttgtccgaggcttccggaaaagaagagacgctgattggaaacaggcatgc |
1526513 |
T |
|
| Q |
106 |
cattgatttcctggattgcgaccttcagctgatagagagtggtggtgttagggtttacgtctaaggaaaacttttcgctgctcggtggaacaataaatac |
205 |
Q |
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| T |
1526514 |
cgttgaattgttggatcgcgaccttcaactgatggacagtggtggcgttagggtttacgtctaaggaaaacttctcgccgctcggtggcacaatgaatac |
1526613 |
T |
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| Q |
206 |
cattgct |
212 |
Q |
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||||||| |
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| T |
1526614 |
cattgct |
1526620 |
T |
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