View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11641_low_8 (Length: 575)
Name: NF11641_low_8
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 3 - 553
Target Start/End: Original strand, 42200733 - 42201311
Alignment:
| Q |
3 |
taatcacttcattgaaatgacaaagaaatggtcgacccctt-gctttaaaaataggatcaaatccctcctttttgagagagagaaccaacatggctttca |
101 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42200733 |
taatcacttctttgaaatgacaaagaaatggtcgacccctttgctttaaaaataggatcaaatccctcctttttgagagagagaaccaacatggctttca |
42200832 |
T |
|
| Q |
102 |
ttagaattgctggtatat--------------gtccatcaggagcattgctcacagacaaagtctcagagaacaatgggatatttaaggttcagtatgaa |
187 |
Q |
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|||||||||||||||||| |||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
42200833 |
ttagaattgctggtatatatatatatatatatgtccattaggagcattgctcagagacaaagtctcggagaacaatgggatatttaaggttcagcatgaa |
42200932 |
T |
|
| Q |
188 |
ggacttaaattggcccaaagaatgcagctgcatgcgtgcnnnnnnnctacgtccccacttgtattgcagccatgaaatgcaaaacaatcaaggccatggc |
287 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
42200933 |
ggacttaaattggcccaaagaatgcagctgcatgcatgcaaaaaaactacgtccccacttgtattgcagccaggaaatgcaaaacaatcaaggctatggc |
42201032 |
T |
|
| Q |
288 |
ttctccaactgtttcagctcctaaaagagagaaagatccaaaaaagagagtagtaataacaggaatgggtcttgtgtcagtctttggaagtgacatagat |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42201033 |
ttctccaactgtttcagctcctaaaagagagaaagatccaaaaaagagagtagtgataacaggaatgggtcttgtgtcagtctttggaagtgacatagat |
42201132 |
T |
|
| Q |
388 |
acattttacaacaagcttctagagggagaaagtgggataagcctaatagataggtttgatg---------gccctgt----ccgttttggtggtcagata |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
42201133 |
acattttacaacaagcttctagagggagaaagtgggataagcctaatagataggtttgatgcctcaagcttccctgtccggccgttttggtggtcagata |
42201232 |
T |
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| Q |
475 |
cgtgatttctcctcagaaggttatattgattccaagagtgaccagcgcctcgataattgctggaggtattctttagttg |
553 |
Q |
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| T |
42201233 |
cgtgatttctcctcagaaggttatattgattccaagaatgaccagcgcctcgataattgctggaggtattctttagttg |
42201311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 112 - 553
Target Start/End: Original strand, 42194894 - 42195354
Alignment:
| Q |
112 |
tggtatatgtccatcaggagcattgctcacagacaaagtctcagagaacaatgggatatttaaggttcagtatgaaggacttaaattggcccaaagaatg |
211 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
42194894 |
tggtatatgtccattaggagcattgctcacagacaaagtctcagagaacaatgggatatttaaggttcagtataaaggacttagattggcccaaagaatg |
42194993 |
T |
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| Q |
212 |
ca----------gctgcatgcgtgcnnnnnnnctacgtccccacttgtattgcagccatgaaatgcaaaacaatcaaggccatggcttctccaactgttt |
301 |
Q |
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|| ||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42194994 |
caaatgccttcagctgcatgcatgcaaaaaaactacgtccccacttgtattgcagccaggaaatgcaaaacaatcaaggccatggcttctccaactgttg |
42195093 |
T |
|
| Q |
302 |
cagctcctaaaagagagaaagatccaaaaaagagagtagtaataacaggaatgggtcttgtgtcagtctttggaagtgacatagatacattttacaacaa |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42195094 |
cagctcctaaaagagagaaagatccaaaaaagagagtagtaataacaggaatgggtcttgtgtcagtctttggaagcaacatagatacattttacaacaa |
42195193 |
T |
|
| Q |
402 |
gcttctagagggagaaagtgggataagcctaatagataggtttgatg---------gccctgtccgttttggtggtcagatacgtgatttctcctcagaa |
492 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||||| |||||||| ||| || |
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| T |
42195194 |
gcttctagagggagaaagtggtataagtctaatagataggtttgatgcctcaagcttccctgtccattttggtggtcagatacgcgatttctcttcaaaa |
42195293 |
T |
|
| Q |
493 |
ggttatattgattccaagagtgaccagcgcctcgataattgctggaggtattctttagttg |
553 |
Q |
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||||| |||||| |||| ||| | |||||||||| |||||| || |||| |||||||| |
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| T |
42195294 |
ggttacattgatggtaagaatgatcggcgcctcgatgattgcttgaaatattgtttagttg |
42195354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 254 - 503
Target Start/End: Original strand, 42185290 - 42185548
Alignment:
| Q |
254 |
cagccatgaaatgcaaaacaatcaaggccatggcttctccaactgtttcagctcctaaaagagagaaagatccaaaaaagagagtagtaataacaggaat |
353 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42185290 |
cagccaagaaatgcaaaacaatcaaggccatggcttctccaactgttacagctcctaaaagagagaaagatccaaaaaagagagtagtaataacaggaat |
42185389 |
T |
|
| Q |
354 |
gggtcttgtgtcagtctttggaagtgacatagatacattttacaacaagcttctagagggagaaagtgggataagcctaatagataggtttgatg----- |
448 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
42185390 |
gggtcttgtgtcagtctttgggagtgacatagatacattttacaccaagcttctagagggagaaagtggtataagcctaatagataagtttgatgcctca |
42185489 |
T |
|
| Q |
449 |
----gccctgtccgttttggtggtcagatacgtgatttctcctcagaaggttatattga |
503 |
Q |
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||| ||||||||||||||||||||||| |||||||| ||| ||||||| ||||| |
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| T |
42185490 |
agcttccccgtccgttttggtggtcagatacgcgatttctcttcaaaaggttacattga |
42185548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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