View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11641_low_9 (Length: 534)
Name: NF11641_low_9
Description: NF11641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11641_low_9 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0564 (1 HSPs) |
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| [»] scaffold0316 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 137 - 534
Target Start/End: Complemental strand, 31556173 - 31555775
Alignment:
| Q |
137 |
catatataatacacaatatataaagtactaattacaccacataggcaaaagatattggaagcaaatgcaatatttctgtatcaagtatcaacagctaggt |
236 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| |||| |||| |||||||||||| || |||||||| |
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| T |
31556173 |
catatagaatacacaatatataaaatactaattacaccacataggagaaatatattggaagcaaaggcaacatttttgtatcaagtatgaatagctaggt |
31556074 |
T |
|
| Q |
237 |
tctaaaattaaaaatataaactatgcactacaattgtctcac-tgctgaatttgaagggnnnnnnngttcacaatgagaccacaaatgtttgagataaat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| | |||||| ||||||||||||||||||||||||||| |
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|
| T |
31556073 |
tctaaaattaaaaatataaactatgcactgcaattgtctcacctgttgaatttgaagagaaaaaaagttcacgatgagaccacaaatgtttgagataaat |
31555974 |
T |
|
| Q |
336 |
acattcttcttcttatacaatacacacagcactctccgactgaaatttcacacgcctatatacacaaaggttgtacataaggcacatatatattttaact |
435 |
Q |
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|||||||||||||||||||||| ||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31555973 |
acattcttcttcttatacaataaacataacactctccgactgaaatttcacacgtctaaatacacaaaggttgtacataaggcacatatatattttaact |
31555874 |
T |
|
| Q |
436 |
cacctgacnnnnnnnatctattgttgaattgggaggctaagaagaattttaaaaggttgaactctgaataagttacacggtaaaaagggattcatctct |
534 |
Q |
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|| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||| |
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| T |
31555873 |
catccgacttttttatactattgttgaattggaaggctatgaagaattttaaaaggttgaactctgaaaaggttacacagtaaaaagggatccatctct |
31555775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 137 - 534
Target Start/End: Complemental strand, 2617 - 2219
Alignment:
| Q |
137 |
catatataatacacaatatataaagtactaattacaccacataggcaaaagatattggaagcaaatgcaatatttctgtatcaagtatcaacagctaggt |
236 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||||| ||||||| ||| |
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| T |
2617 |
catataaaatacacaatatataaaatactaattacaccacataggagaaagatattggaagcaaaggcaacatttttgtatcaagtatgaacagctgggt |
2518 |
T |
|
| Q |
237 |
tctaaaattaaaaatataaactatgcactacaattgtctca-ctgctgaatttgaagggnnnnnnngttcacaatgagaccacaaatgtttgagataaat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| | ||| || ||||||||||||||||||||||||||| |
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| T |
2517 |
tctaaaattaaaaatataaactatgcactgcaattgtctcacctgttgaatttgaagagaaaaaaagtttacgatgagaccacaaatgtttgagataaat |
2418 |
T |
|
| Q |
336 |
acattcttcttcttatacaatacacacagcactctccgactgaaatttcacacgcctatatacacaaaggttgtacataaggcacatatatattttaact |
435 |
Q |
| |
|
|||||||||||||||||||||| | | | |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2417 |
acattcttcttcttatacaataaatataatactctccgactgaaatttcacacgcctaaatacacaaaggttgtatataaggcacatatatattttaact |
2318 |
T |
|
| Q |
436 |
cacctgacnnnnnnnatctattgttgaattgggaggctaagaagaattttaaaaggttgaactctgaataagttacacggtaaaaagggattcatctct |
534 |
Q |
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|| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||| |
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| T |
2317 |
catccgacttttttatactattgttgaattggaaggctatgaagaattttaaaaggttgaactctgaaaaggttacacagtaaaaagggatccatctct |
2219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 137 - 534
Target Start/End: Original strand, 4693 - 5091
Alignment:
| Q |
137 |
catatataatacacaatatataaagtactaattacaccacataggcaaaagatattggaagcaaatgcaatatttctgtatcaagtatcaacagctaggt |
236 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||||| ||||||||||| |
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| T |
4693 |
catataaaatacacaatatataaaatactaattacaccacataggagaaagatattggaagcaaaggcaacatttttgtatcaagtatgaacagctaggt |
4792 |
T |
|
| Q |
237 |
tctaaaattaaaaatataaactatgcactacaattgtctca-ctgctgaatttgaagggnnnnnnngttcacaatgagaccacaaatgtttgagataaat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| | ||| || ||||||||||||||||||||||||||| |
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|
| T |
4793 |
tctaaaattaaaaatataaactatgcactgcaattgtctcacctgttgaatttgaagagaaaaaaagttaacgatgagaccacaaatgtttgagataaat |
4892 |
T |
|
| Q |
336 |
acattcttcttcttatacaatacacacagcactctccgactgaaatttcacacgcctatatacacaaaggttgtacataaggcacatatatattttaact |
435 |
Q |
| |
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|||||||||||||||||||||| | | | ||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| |
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| T |
4893 |
acattcttcttcttatacaataaatataatactctccgactgaaatttcacacgcttaaatacacaaaggttgtatataaggcacatatatattttaact |
4992 |
T |
|
| Q |
436 |
cacctgacnnnnnnnatctattgttgaattgggaggctaagaagaattttaaaaggttgaactctgaataagttacacggtaaaaagggattcatctct |
534 |
Q |
| |
|
|| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||| |
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|
| T |
4993 |
catccgacttttttatactattgttgaattggaaggctatgaagaattttaaaaggttgaactctgaaaaggttacacagtaaaaagggatccatctct |
5091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 137 - 534
Target Start/End: Complemental strand, 32546330 - 32545932
Alignment:
| Q |
137 |
catatataatacacaatatataaagtactaattacaccacataggcaaaagatattggaagcaaatgcaatatttctgtatcaagtatcaacagctaggt |
236 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||||| ||||||||||| |
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| T |
32546330 |
catataaaatacacaatatataaaatactaattacaccacataggagaaagatattggaagcaaaggcaacatttttgtatcaagtatgaacagctaggt |
32546231 |
T |
|
| Q |
237 |
tctaaaattaaaaatataaactatgcactacaattgtctca-ctgctgaatttgaagggnnnnnnngttcacaatgagaccacaaatgtttgagataaat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| | ||| || ||||||||||||||||||||||||||| |
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|
| T |
32546230 |
tctaaaattaaaaatataaactatgcactgcaattgtctcacctgttgaatttgaagagaaaaaaagtttacgatgagaccacaaatgtttgagataaat |
32546131 |
T |
|
| Q |
336 |
acattcttcttcttatacaatacacacagcactctccgactgaaatttcacacgcctatatacacaaaggttgtacataaggcacatatatattttaact |
435 |
Q |
| |
|
|||||||||||||||||||||| | | | |||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
32546130 |
acattcttcttcttatacaataaatataatactctccgactgaaatttcacacgcctaaatacacaaaggttgtatataaggcatatatatattttaact |
32546031 |
T |
|
| Q |
436 |
cacctgacnnnnnnnatctattgttgaattgggaggctaagaagaattttaaaaggttgaactctgaataagttacacggtaaaaagggattcatctct |
534 |
Q |
| |
|
|| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||| |
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| T |
32546030 |
catccgacttttttatactattgttgaattggaaggctatgaagaattttaaaaggttgaactctgaaaaggttacacagtaaaaagggatccatctct |
32545932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 137 - 534
Target Start/End: Complemental strand, 34210636 - 34210238
Alignment:
| Q |
137 |
catatataatacacaatatataaagtactaattacaccacataggcaaaagatattggaagcaaatgcaatatttctgtatcaagtatcaacagctaggt |
236 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||||| ||||||| ||| |
|
|
| T |
34210636 |
catataaaatacacaatatataaaatactaattacaccacataggagaaagatattggaagcaaaggcaacatttttgtatcaagtatgaacagctgggt |
34210537 |
T |
|
| Q |
237 |
tctaaaattaaaaatataaactatgcactacaattgtctca-ctgctgaatttgaagggnnnnnnngttcacaatgagaccacaaatgtttgagataaat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| | ||| || ||||||||||||||||||||||||||| |
|
|
| T |
34210536 |
tctaaaattaaaaatataaactatgcactgcaattgtctcacctgttgaatttgaagagaaaaaaagtttacgatgagaccacaaatgtttgagataaat |
34210437 |
T |
|
| Q |
336 |
acattcttcttcttatacaatacacacagcactctccgactgaaatttcacacgcctatatacacaaaggttgtacataaggcacatatatattttaact |
435 |
Q |
| |
|
|||||||||||||||||||||| | | | |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34210436 |
acattcttcttcttatacaataaatataatactctccgactgaaatttcacacgcctaaatacacaaaggttgtatataaggcacatatatattttaact |
34210337 |
T |
|
| Q |
436 |
cacctgacnnnnnnnatctattgttgaattgggaggctaagaagaattttaaaaggttgaactctgaataagttacacggtaaaaagggattcatctct |
534 |
Q |
| |
|
|| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||| |
|
|
| T |
34210336 |
catccgacttttttatactattgttgaattggaaggctatgaagaattttaaaaggttgaactctgaaaaggttacacagtaaaaagggatccatctct |
34210238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 375 - 534
Target Start/End: Original strand, 39821622 - 39821781
Alignment:
| Q |
375 |
ctgaaatttcacacgcctatatacacaaaggttgtacataaggcacatatatattttaactcacctgacnnnnnnnatctattgttgaattgggaggcta |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
39821622 |
ctgaaatttcacacgcctatatacacaaaggttgtacataaggcacatatatattttaactcacccgacttttttatactattgttgaattgggaggcta |
39821721 |
T |
|
| Q |
475 |
agaagaattttaaaaggttgaactctgaataagttacacggtaaaaagggattcatctct |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
39821722 |
tgaagaattttaaaaggttgaactctgaataagttacacagtaaaaagggatccatctct |
39821781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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