View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11642_high_5 (Length: 299)
Name: NF11642_high_5
Description: NF11642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11642_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 33752299 - 33752019
Alignment:
| Q |
1 |
ttccattgactcgcaaagaggggtatcaggaccaaatttcaatacagtctcgttatccgtggatgtgtggtggtgattggatgagttagtactttctagc |
100 |
Q |
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| T |
33752299 |
ttccattgattcgcaaagaggggtatcaggaccaaatttcaatacagtctcgttatccgtagatgtgtggtggtgatcggatgagttagtactttctagc |
33752200 |
T |
|
| Q |
101 |
ctcgtggttggaattccattcgtggttactataatttgccggtattgagaggctaggtgcttattcttccgcctcccagcacctatcggaacatttctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33752199 |
ctcgtggttggaattccattcgtggttactataatttgccggtattgagaggctaggtgcttattcttccgcctcccagcacctatcggaacatttctca |
33752100 |
T |
|
| Q |
201 |
ttgttccaccagcagtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacattatagttgttgaaataac |
281 |
Q |
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| T |
33752099 |
ttgttccaccagcagtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacattatagttgttgaaataac |
33752019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 2823737 - 2823652
Alignment:
| Q |
179 |
gcacctatcggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacatt |
264 |
Q |
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| T |
2823737 |
gcacctaccggtacgtttctcatggttccaccggcagtccaatatctctggcagttcttgcagaaatgacggggttggttgacatt |
2823652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 281
Target Start/End: Original strand, 9423933 - 9424071
Alignment:
| Q |
143 |
tattgagaggctaggtgcttattcttccgcctcccagcacctatcggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcaga |
242 |
Q |
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|||||||| |||| ||||| ||| |||| ||||| ||||| | ||||| ||||||||| ||||||| ||||||||||| || || || ||| || | |
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| T |
9423933 |
tattgagaagctatctgcttgttcctccgtctccctgcaccgaaaggaacgtttctcatttttccaccggcagtccaatatctatgacatttccgacaaa |
9424032 |
T |
|
| Q |
243 |
aatgtcgaggttgattgacattatagttgttgaaataac |
281 |
Q |
| |
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|||| ||||||||| ||||||||||||| |||||||||| |
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| T |
9424033 |
aatgccgaggttgactgacattatagttattgaaataac |
9424071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 281
Target Start/End: Original strand, 9431264 - 9431402
Alignment:
| Q |
143 |
tattgagaggctaggtgcttattcttccgcctcccagcacctatcggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcaga |
242 |
Q |
| |
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|||||||| |||| ||| || |||||||| ||||| ||||| | | ||| ||||||||||||||||| |||||||| || || || || || | |
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| T |
9431264 |
tattgagaagctatgtgtttgttcttccgtctccctgcaccaacagcaacgtttctcattgttccaccgttggtccaatatctgtgacaactccgacaaa |
9431363 |
T |
|
| Q |
243 |
aatgtcgaggttgattgacattatagttgttgaaataac |
281 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||||| |
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| T |
9431364 |
aatgccgaggttgattgacattgtagttgttgaaataac |
9431402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 31771910 - 31771817
Alignment:
| Q |
188 |
ggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacattatagttgttgaaataac |
281 |
Q |
| |
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|||||||||||||||||||| || ||||||||||| ||||| || ||||| || ||||| ||||| || |||||||| || |||||||| |||| |
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| T |
31771910 |
ggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggttgacattgtaattgttgaagtaac |
31771817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 11624746 - 11624804
Alignment:
| Q |
187 |
cggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcagaaat |
245 |
Q |
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||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||| |
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| T |
11624746 |
cggaacatttctcatggttccacctgcagtccaatatctttgacacgccttgcagaaat |
11624804 |
T |
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