View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11642_high_7 (Length: 258)
Name: NF11642_high_7
Description: NF11642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11642_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 8683269 - 8683051
Alignment:
| Q |
20 |
agattgaaaaaatgtgcttagtccagacacaaatagaagtgtctgtatcaccctagtcttctcagcctacattgaatcaaaccattttgttcattaatac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683269 |
agattgaaaaaatgtgcttagtccagacacaaatagaagtgtctgtatcaccctagtcttctcagcctacattgaatcaaaccattttgttcattaatac |
8683170 |
T |
|
| Q |
120 |
tattataaaagttgcttaaaattaaaagcaaatacaaattgatcagaaatatttctcacatctcctccacccatttgaggaacaattatagttggaatca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683169 |
tattataaaagttgcttaaaattaaaagcaaatacaaattgatcagaaatatttctcacatctcctccacccatttgaggaacaattatagttggaatca |
8683070 |
T |
|
| Q |
220 |
gaactgtaatgccaagagt |
238 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8683069 |
gaactgtaatgccaagagt |
8683051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 47579393 - 47579340
Alignment:
| Q |
185 |
tccacccatttgaggaacaattatagttggaatcagaactgtaatgccaagagt |
238 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
47579393 |
tccacccatttgaggaacaactatagttggaatcaaaactgtcatgccaagagt |
47579340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University