View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11642_low_10 (Length: 247)
Name: NF11642_low_10
Description: NF11642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11642_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8683665 - 8683903
Alignment:
| Q |
1 |
gttcattgattcattcacaggttccttagtccactttctgtagttccatatgtaacattcgctggacttggtctctatcaacttggttttccaatggtga |
100 |
Q |
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| T |
8683665 |
gttcattgattcattcacaggttccttagtccactttctgtagttccatatgtaacattcgctggacttggtctctatcaacttggttttccaatggtga |
8683764 |
T |
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| Q |
101 |
agaattgaggattaaagaatacaacccttttgattttttgcttcttaacttctctatttatgatttgaaaattaattttgcagcttgcgaaatgtgttga |
200 |
Q |
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| T |
8683765 |
agaattgaggattaaagaatacaacccttttgattttttgcttcttaacttctctatttatgatttgaaaattaattttgcagcttgcgaaatgtgttga |
8683864 |
T |
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| Q |
201 |
aattggacttcctgcattaattgttatggttttcatctc |
239 |
Q |
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| T |
8683865 |
aattggacttcctgcattaattgttatggttttcatctc |
8683903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 47579890 - 47579970
Alignment:
| Q |
18 |
caggttccttagtccactttctgtagttccatatgtaacattcgctggacttggtctctatcaacttggttttccaatggt |
98 |
Q |
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| T |
47579890 |
caggttccttagcccactttgtgttgtcccttatgtaacattcactggacttggtctctatcatcttggttttcctatggt |
47579970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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