View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11642_low_2 (Length: 615)
Name: NF11642_low_2
Description: NF11642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11642_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 181 - 428
Target Start/End: Complemental strand, 14772605 - 14772356
Alignment:
| Q |
181 |
tcgttgaaaatattctttaaccgacaattattgttatattaacgaacttcctacttcccccaaacatcgaagaccaaatgcattaacatggtcttgtact |
280 |
Q |
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| T |
14772605 |
tcgttgaaaatattctttaaccgacaattattgttatattaacgaacttcctacttcccccaaacatcgaagaccaaatgcattaacatggtcttgtact |
14772506 |
T |
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| Q |
281 |
attgtnnnnnnngttggtcttgttgatacaataacttggtaaaataatagcagtttttactttttagtcaaacttgttaaggagaaacaatgcataaaac |
380 |
Q |
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| T |
14772505 |
attgtaaaaaaatttggtcgtgttgatgcaataacttggtaaaataatagcagtttttactttttagtcaaacttgttaaggagaaacaatgcataaaac |
14772406 |
T |
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| Q |
381 |
acagaat--tatcattatcctaatttggaacaatattttcctattcctta |
428 |
Q |
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| T |
14772405 |
acagaattatatcattatcctaatttggaacaatattttcctattcctta |
14772356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 429 - 566
Target Start/End: Complemental strand, 14772263 - 14772126
Alignment:
| Q |
429 |
acccacattttattgatgaataaataagaatctgtcattcttatatctcattcnnnnnnnaaaacaccaatagtggcgctaccaatagcaacctcaaatc |
528 |
Q |
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| T |
14772263 |
acccacattttattgatgaataaataagaatctgtcattcatatatctcattctttttttaaaacaccaatagtggcgctaccaatagcaaactcaaatc |
14772164 |
T |
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| Q |
529 |
aattttttggaataggttatcttagttggtggttttgc |
566 |
Q |
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| T |
14772163 |
aattttttggaataggttatcttagttggtggttttgc |
14772126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 14772670 - 14772619
Alignment:
| Q |
143 |
atagttctttatttagtcaaatcaattagactgacttttcgttgaaaatatt |
194 |
Q |
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| T |
14772670 |
atagttctttatttagtcaaatcaattcgactgacttttcgttgaaaatatt |
14772619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 14772853 - 14772807
Alignment:
| Q |
24 |
gaatcttaaaccaaataaa-cgttctaatttgttttctaaagaaaaa |
69 |
Q |
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| T |
14772853 |
gaatcttaaaccaaataaatcgttctaatttgttttgtaaagaaaaa |
14772807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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