View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11642_low_3 (Length: 415)
Name: NF11642_low_3
Description: NF11642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11642_low_3 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 8683661 - 8683246
Alignment:
| Q |
1 |
taagataacaaatcaaagatttacataaaaatcgaaacaaaagacgttacagatactaacctgacagcatttctccnnnnnnnnnnnnntccaatagcca |
100 |
Q |
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| T |
8683661 |
taagataacaaatcaaagatttacataaaaatcgaaacaaaagaagttacagatactaacctgacagcatttctccaaaaaccaaaaaatccaatagcca |
8683562 |
T |
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| Q |
101 |
tttggaaacttgaacttatgatcaaagcaccttgaatccctctcattgtcatagtaaacctctaggaaattcaaacaaacatgtagacaaagtcagcaaa |
200 |
Q |
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| T |
8683561 |
tttggaaacttgaacttatgatcaaagcaccttgaatccctctcattgtcatagtaaacctctaggaaattcaaacaaacatgtagacaaagtcagcaaa |
8683462 |
T |
|
| Q |
201 |
atgaaaacgctaaagagtgaaacattttccatttataacatgtacgaaaaaa-cagaagcataaaaaatagtttgatttacctcataaggatctgtatat |
299 |
Q |
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| T |
8683461 |
atgaaaacgctaaagagtgaaacattttccatttataacatgtacgaaaaaaacagaagcataaaaaatagtttgatttacctcataaggatctgtatat |
8683362 |
T |
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| Q |
300 |
gcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatcgagttccgaacaaagattgaa |
399 |
Q |
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| T |
8683361 |
gcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatcgagttccgaacaaagattgaa |
8683262 |
T |
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| Q |
400 |
aaaatgtgcttagtcc |
415 |
Q |
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| T |
8683261 |
aaaatgtgcttagtcc |
8683246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 279 - 415
Target Start/End: Complemental strand, 47579685 - 47579549
Alignment:
| Q |
279 |
acctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatc |
378 |
Q |
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| T |
47579685 |
acctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataattggtatcatgtaagtgtatgaaccaacaactacacttggcaatc |
47579586 |
T |
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| Q |
379 |
gagttccgaacaaagattgaaaaaatgtgcttagtcc |
415 |
Q |
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| T |
47579585 |
gggttccgaataaagattgaagaaacgtgctcagtcc |
47579549 |
T |
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