View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11642_low_6 (Length: 298)
Name: NF11642_low_6
Description: NF11642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11642_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 191850 - 191570
Alignment:
| Q |
1 |
tcatacttaagcttactcctaatataagttaactcctaaaacttaagtttgctccgaaacagttacatcttcataaatggcaaagggttatttactgcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
191850 |
tcatacttaagcttactcctaatataagttaactcctaaaacttaagtttgctccgaaacagttacatcttcataaatggcaaagggttatttgctgcat |
191751 |
T |
|
| Q |
101 |
gcttaagccaatccaatcttctatccttaaaaccttcaaaggaaacaaacatctccctagctggcttgtacatcattagttgacagcatttcatgaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
191750 |
gcttaagccaatccaatcttctatccttaaaaccttcaaaggaaacaaacatctccctagctggcttgtacatcattagttgacagcatttcatgaacaa |
191651 |
T |
|
| Q |
201 |
gtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
191650 |
gtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatt |
191570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 719454 - 719174
Alignment:
| Q |
1 |
tcatacttaagcttactcctaatataagttaactcctaaaacttaagtttgctccgaaacagttacatcttcataaatggcaaagggttatttactgcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
719454 |
tcatacttaagcttactcctaatataagttaactcctaaaacttaagtttgctccgaaacagttacatcttcataaatggcaaagggttatttgctgcat |
719355 |
T |
|
| Q |
101 |
gcttaagccaatccaatcttctatccttaaaaccttcaaaggaaacaaacatctccctagctggcttgtacatcattagttgacagcatttcatgaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
719354 |
gcttaagccaatccaatcttctatccttaaaaccttcaaaggaaacaaacatctccctagctggcttgtacatcattagttgacagcatttcatgaacaa |
719255 |
T |
|
| Q |
201 |
gtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
719254 |
gtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatt |
719174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 880561 - 880281
Alignment:
| Q |
1 |
tcatacttaagcttactcctaatataagttaactcctaaaacttaagtttgctccgaaacagttacatcttcataaatggcaaagggttatttactgcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
880561 |
tcatacttaagcttactcctaatataagttaactcctaaaacttaagtttgctccgaaacagttacatcttcataaatggcaaagggttatttgctgcat |
880462 |
T |
|
| Q |
101 |
gcttaagccaatccaatcttctatccttaaaaccttcaaaggaaacaaacatctccctagctggcttgtacatcattagttgacagcatttcatgaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
880461 |
gcttaagccaatccaatcttctatccttaaaaccttcaaaggaaacaaacatctccctagctggcttgtacatcattagttgacagcatttcatgaacaa |
880362 |
T |
|
| Q |
201 |
gtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
880361 |
gtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatt |
880281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 19646114 - 19646064
Alignment:
| Q |
217 |
atttcatccatgctatggagctcagccatcactacaccaatagatgcatta |
267 |
Q |
| |
|
|||||||||||| | || |||| |||||||||| ||||||||||||||||| |
|
|
| T |
19646114 |
atttcatccatggtgtgaagcttagccatcacttcaccaatagatgcatta |
19646064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 51127003 - 51127283
Alignment:
| Q |
1 |
tcatacttaagcttactcctaatataagttaactcctaaaacttaagtttgctccgaaacagttacatcttcataaatggcaaagggttatttactgcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51127003 |
tcatacttaagcttactcctaatataagttaactcctaaaacttaagtttgctccgaaacagttacatcttcataaatggcaaagggttatttgctgcat |
51127102 |
T |
|
| Q |
101 |
gcttaagccaatccaatcttctatccttaaaaccttcaaaggaaacaaacatctccctagctggcttgtacatcattagttgacagcatttcatgaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51127103 |
gcttaagccaatccaatcttctatccttaaaaccttcaaaggaaacaaacatctccctagctggcttgtacatcattagttgacagcatttcatgaacaa |
51127202 |
T |
|
| Q |
201 |
gtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51127203 |
gtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatt |
51127283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 13894628 - 13894353
Alignment:
| Q |
5 |
acttaagcttactcctaatataagttaactcctaaaacttaagtttgctccgaaacagttacatcttcataaatggcaaagggttatttactgcatgctt |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| | ||||||| | ||||||||||||||||||||||||||| || |||||||| | ||||| ||| |
|
|
| T |
13894628 |
acttaagcttactcctaatataagataagtcctgatacttaagagag-tccgaaacagttacatcttcataaatgacatagggttatctgttgcatactt |
13894530 |
T |
|
| Q |
105 |
aagccaatccaatcttctatccttaaaaccttcaaaggaaacaaacatctccctagctggcttgtacatcattagttgacagcatttcatgaacaagtct |
204 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
13894529 |
aagccatttcaaccttctatccttaaaaccttgaaaggaaacaaacatctccctagctggcttgaacatcattagttgacaacattttgcgaacaagtct |
13894430 |
T |
|
| Q |
205 |
atatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatt |
281 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
13894429 |
acatcacttgtaatttcatccatgctatggagctcagccatcacatcaccaatagatgcattagttaaaacatcatt |
13894353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 14035255 - 14034980
Alignment:
| Q |
5 |
acttaagcttactcctaatataagttaactcctaaaacttaagtttgctccgaaacagttacatcttcataaatggcaaagggttatttactgcatgctt |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| | ||||||| | ||||||||||||||||||||||||||| || |||||||| | ||||| ||| |
|
|
| T |
14035255 |
acttaagcttactcctaatataagataagtcctgatacttaagagag-tccgaaacagttacatcttcataaatgacatagggttatctgttgcatactt |
14035157 |
T |
|
| Q |
105 |
aagccaatccaatcttctatccttaaaaccttcaaaggaaacaaacatctccctagctggcttgtacatcattagttgacagcatttcatgaacaagtct |
204 |
Q |
| |
|
|||||| | ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
14035156 |
aagccatttcaaccttctatccttaaatccttgaaaggaaacaaacatctccctagctggcttgaacatcattagttgacaacattttgcgaacaagtct |
14035057 |
T |
|
| Q |
205 |
atatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatt |
281 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
14035056 |
acatcacttgtaatttcatccatgctatggagctcagccatcacatcaccaatagatgcattagttaaaacatcatt |
14034980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13894668 - 13894622
Alignment:
| Q |
1 |
tcatacttaagcttactcctaatataagttaactcctaaaacttaag |
47 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13894668 |
tcatacttaagcttactcctaatataagataactcctaaaacttaag |
13894622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14035295 - 14035249
Alignment:
| Q |
1 |
tcatacttaagcttactcctaatataagttaactcctaaaacttaag |
47 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14035295 |
tcatacttaagcttactcctaatataagataactcctaaaacttaag |
14035249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 23376514 - 23376564
Alignment:
| Q |
217 |
atttcatccatgctatggagctcagccatcactacaccaatagatgcatta |
267 |
Q |
| |
|
|||||||||||| | || |||||| |||||||| ||||||||||||||||| |
|
|
| T |
23376514 |
atttcatccatggtgtgaagctcaaccatcacttcaccaatagatgcatta |
23376564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 33231085 - 33230810
Alignment:
| Q |
5 |
acttaagcttactcctaatataagttaactcctaaaacttaagtttgctccgaaacagttacatcttcataaatggcaaagggttatttactgcatgctt |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| | ||||||| | ||||||||||||||||||||||||||| || |||||||| | ||||| ||| |
|
|
| T |
33231085 |
acttaagcttactcctaatataagataagtcctgatacttaagagag-tccgaaacagttacatcttcataaatgacatagggttatctgttgcatactt |
33230987 |
T |
|
| Q |
105 |
aagccaatccaatcttctatccttaaaaccttcaaaggaaacaaacatctccctagctggcttgtacatcattagttgacagcatttcatgaacaagtct |
204 |
Q |
| |
|
|||||| | ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
33230986 |
aagccatttcaaccttctatccttaaagccttgaaaggaaacaaacatctccctagctggcttgaacatcattagttgacaacattttgcgaacaagtct |
33230887 |
T |
|
| Q |
205 |
atatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatt |
281 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
33230886 |
acatcacttgtaatttcatccatgctatggagctcagccatcacatcaccaatagatgcattagttaaaacatcatt |
33230810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33231125 - 33231079
Alignment:
| Q |
1 |
tcatacttaagcttactcctaatataagttaactcctaaaacttaag |
47 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33231125 |
tcatacttaagcttactcctaatataagataactcctaaaacttaag |
33231079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 4344027 - 4343977
Alignment:
| Q |
217 |
atttcatccatgctatggagctcagccatcactacaccaatagatgcatta |
267 |
Q |
| |
|
|||||||||||| | || ||||||||||||||| ||||||||||||||||| |
|
|
| T |
4344027 |
atttcatccatggtgtgaagctcagccatcacttcaccaatagatgcatta |
4343977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 33574131 - 33574087
Alignment:
| Q |
145 |
acaaacatctccctagctggcttgtacatcattagttgacagcat |
189 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
33574131 |
acaaacatctcccttgctggcttaaacatcattagttgacagcat |
33574087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 22696680 - 22696630
Alignment:
| Q |
217 |
atttcatccatgctatggagctcagccatcactacaccaatagatgcatta |
267 |
Q |
| |
|
|||||||||||| | || ||||||||||||||| | ||||||||||||||| |
|
|
| T |
22696680 |
atttcatccatggtgtgaagctcagccatcacttcgccaatagatgcatta |
22696630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 17832788 - 17832824
Alignment:
| Q |
237 |
ctcagccatcactacaccaatagatgcattatttata |
273 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
17832788 |
ctcagccatcacttcaccaatagatgcattacttata |
17832824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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