View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11642_low_8 (Length: 256)

Name: NF11642_low_8
Description: NF11642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11642_low_8
NF11642_low_8
[»] chr8 (12 HSPs)
chr8 (1-256)||(191931-192186)
chr8 (1-256)||(719535-719790)
chr8 (1-256)||(880642-880897)
chr8 (1-68)||(192187-192254)
chr8 (1-68)||(719791-719858)
chr8 (1-68)||(880898-880965)
chr8 (1-68)||(192255-192322)
chr8 (1-68)||(719859-719926)
chr8 (1-68)||(880966-881033)
chr8 (1-81)||(192265-192345)
chr8 (1-81)||(719869-719949)
chr8 (1-81)||(880976-881056)
[»] chr3 (4 HSPs)
chr3 (1-256)||(51126667-51126922)
chr3 (1-68)||(51126599-51126666)
chr3 (1-68)||(51126531-51126598)
chr3 (1-81)||(51126508-51126588)
[»] chr2 (4 HSPs)
chr2 (91-254)||(13894681-13894856)
chr2 (91-254)||(14035308-14035483)
chr2 (213-254)||(13894609-13894650)
chr2 (213-254)||(14035236-14035277)
[»] chr5 (2 HSPs)
chr5 (91-254)||(33231138-33231313)
chr5 (213-254)||(33231066-33231107)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 192186 - 191931
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaatatagcagaaatatagcataaactatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  192186 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaatatagcagaaatatagcataaactatagc 192087  T
Q  101 agaaaacacgacagaaaaacacataataggatccacttcattcaaatttcaaattatatattacatattacggtgcaagttctaaaaggatccacatcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  192086 agaaaacacgacagaaaaacacataataggatccacttcattcaaatttcaaattatatattacatattacggtgcaagttctaaaaggatccacatcat 191987  T
Q  201 taaagataacttctaatataagatcactcctaatacttaagcttactcctaatact 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  191986 taaagataacttctaatataagatcactcctaatacttaagcttactcctaatact 191931  T

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Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 719790 - 719535
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaatatagcagaaatatagcataaactatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  719790 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaatatagcagaaatatagcataaactatagc 719691  T
Q  101 agaaaacacgacagaaaaacacataataggatccacttcattcaaatttcaaattatatattacatattacggtgcaagttctaaaaggatccacatcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  719690 agaaaacacgacagaaaaacacataataggatccacttcattcaaatttcaaattatatattacatattacggtgcaagttctaaaaggatccacatcat 719591  T
Q  201 taaagataacttctaatataagatcactcctaatacttaagcttactcctaatact 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  719590 taaagataacttctaatataagatcactcctaatacttaagcttactcctaatact 719535  T

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Target: chr8; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 880897 - 880642
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaatatagcagaaatatagcataaactatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  880897 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaatatagcagaaatatagcataaactatagc 880798  T
Q  101 agaaaacacgacagaaaaacacataataggatccacttcattcaaatttcaaattatatattacatattacggtgcaagttctaaaaggatccacatcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  880797 agaaaacacgacagaaaaacacataataggatccacttcattcaaatttcaaattatatattacatattacggtgcaagttctaaaaggatccacatcat 880698  T
Q  201 taaagataacttctaatataagatcactcctaatacttaagcttactcctaatact 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  880697 taaagataacttctaatataagatcactcctaatacttaagcttactcctaatact 880642  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 192254 - 192187
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacag 68  Q
    ||||||||||| ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  192254 tatagcagaattatgtaaagaattataacagaattatgtacagaaaactatagcagaattatgtacag 192187  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 719858 - 719791
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacag 68  Q
    ||||||||||| ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  719858 tatagcagaattatgtaaagaattataacagaattatgtacagaaaactatagcagaattatgtacag 719791  T

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Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 880965 - 880898
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacag 68  Q
    ||||||||||| ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  880965 tatagcagaattatgtaaagaattataacagaattatgtacagaaaactatagcagaattatgtacag 880898  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 192322 - 192255
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacag 68  Q
    ||||||||||| ||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  192322 tatagcagaatgatgtacagaattataacagaattatgtacagaaaactatagcagaattatgtacag 192255  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 719926 - 719859
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacag 68  Q
    ||||||||||| ||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  719926 tatagcagaatgatgtacagaattataacagaattatgtacagaaaactatagcagaattatgtacag 719859  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 881033 - 880966
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacag 68  Q
    ||||||||||| ||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  881033 tatagcagaatgatgtacagaattataacagaattatgtacagaaaactatagcagaattatgtacag 880966  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 192345 - 192265
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaa--tatagcagaa 81  Q
    ||||||||||| |||||||||||||||||||||  ||||||  | || |||| ||||||||||||||||||  ||||||||||    
T  192345 tatagcagaattatgtaaagaattatagcagaatgatgtac--agaattataacagaattatgtacagaaaactatagcagaa 192265  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 719949 - 719869
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaa--tatagcagaa 81  Q
    ||||||||||| |||||||||||||||||||||  ||||||  | || |||| ||||||||||||||||||  ||||||||||    
T  719949 tatagcagaattatgtaaagaattatagcagaatgatgtac--agaattataacagaattatgtacagaaaactatagcagaa 719869  T

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Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 881056 - 880976
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaa--tatagcagaa 81  Q
    ||||||||||| |||||||||||||||||||||  ||||||  | || |||| ||||||||||||||||||  ||||||||||    
T  881056 tatagcagaattatgtaaagaattatagcagaatgatgtac--agaattataacagaattatgtacagaaaactatagcagaa 880976  T

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Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 51126667 - 51126922
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaatatagcagaaatatagcataaactatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51126667 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaatatagcagaaatatagcataaactatagc 51126766  T
Q  101 agaaaacacgacagaaaaacacataataggatccacttcattcaaatttcaaattatatattacatattacggtgcaagttctaaaaggatccacatcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51126767 agaaaacacgacagaaaaacacataataggatccacttcattcaaatttcaaattatatattacatattacggtgcaagttctaaaaggatccacatcat 51126866  T
Q  201 taaagataacttctaatataagatcactcctaatacttaagcttactcctaatact 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51126867 taaagataacttctaatataagatcactcctaatacttaagcttactcctaatact 51126922  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 51126599 - 51126666
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacag 68  Q
    ||||||||||| ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  51126599 tatagcagaattatgtaaagaattataacagaattatgtacagaaaactatagcagaattatgtacag 51126666  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 51126531 - 51126598
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacag 68  Q
    ||||||||||| ||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  51126531 tatagcagaatgatgtacagaattataacagaattatgtacagaaaactatagcagaattatgtacag 51126598  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 51126508 - 51126588
Alignment:
Q  1 tatagcagaatcatgtaaagaattatagcagaactatgtacaaaaaactatagcagaattatgtacagaaa--tatagcagaa 81  Q
    ||||||||||| |||||||||||||||||||||  ||||||  | || |||| ||||||||||||||||||  ||||||||||    
T  51126508 tatagcagaattatgtaaagaattatagcagaatgatgtac--agaattataacagaattatgtacagaaaactatagcagaa 51126588  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 91 - 254
Target Start/End: Complemental strand, 13894856 - 13894681
Alignment:
Q  91 aaactatagcagaaaacacgacagaaaaacacataataggatccacttcattcaaatttcaaattatatattacatattacg------------gtgcaa 178  Q
    |||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||  | ||||||||| ||||             ||||||    
T  13894856 aaactatagcagaaaacatgatagaaaaatacataataggatccacttcattcaaatttcaaaagacatattacatgttacattatatgttacagtgcaa 13894757  T
Q  179 gttctaaaaggatccacatcattaaagataacttctaatataagatcactcctaatacttaagcttactcctaata 254  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  13894756 gttctaaaaggatccacatcattaaagataactcctaatataagatcactcctaatacttaaacttactcctaata 13894681  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 91 - 254
Target Start/End: Complemental strand, 14035483 - 14035308
Alignment:
Q  91 aaactatagcagaaaacacgacagaaaaacacataataggatccacttcattcaaatttcaaattatatattacatattacg------------gtgcaa 178  Q
    ||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||  | ||||||||| ||||             ||||||    
T  14035483 aaactatagcataaaacatgatagaaaaatacataataggatccacttcattcaaatttcaaaagacatattacatgttacattatatgttacagtgcaa 14035384  T
Q  179 gttctaaaaggatccacatcattaaagataacttctaatataagatcactcctaatacttaagcttactcctaata 254  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  14035383 gttctaaaaggatccacatcattaaagataactcctaatataagatcactcctaatacttaaacttactcctaata 14035308  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 13894650 - 13894609
Alignment:
Q  213 ctaatataagatcactcctaatacttaagcttactcctaata 254  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  13894650 ctaatataagataactcctaaaacttaagcttactcctaata 13894609  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 14035277 - 14035236
Alignment:
Q  213 ctaatataagatcactcctaatacttaagcttactcctaata 254  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  14035277 ctaatataagataactcctaaaacttaagcttactcctaata 14035236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 91 - 254
Target Start/End: Complemental strand, 33231313 - 33231138
Alignment:
Q  91 aaactatagcagaaaacacgacagaaaaacacataataggatccacttcattcaaatttcaaattatatattacatattacg------------gtgcaa 178  Q
    ||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||  | ||||||||| ||||             ||||||    
T  33231313 aaactatagcaaaaaacatgatagaaaaatacataataggatccacttcattcaaatttcaaaagacatattacatgttacattatatgttacagtgcaa 33231214  T
Q  179 gttctaaaaggatccacatcattaaagataacttctaatataagatcactcctaatacttaagcttactcctaata 254  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  33231213 gttctaaaaggatccacatcattaaagataactcctaatataagatcactcctaatacttaaacttactcctaata 33231138  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 33231107 - 33231066
Alignment:
Q  213 ctaatataagatcactcctaatacttaagcttactcctaata 254  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  33231107 ctaatataagataactcctaaaacttaagcttactcctaata 33231066  T

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