View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11643_high_13 (Length: 271)
Name: NF11643_high_13
Description: NF11643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11643_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 31761876 - 31761667
Alignment:
| Q |
1 |
atcatgtcaaacaattaggtatcaatggtgcaagtttgcaagaaaagtagttgggttcatgttgtactcatgcaagagacttaaacttttttgtatacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31761876 |
atcatgtcaaacaattaggtatcaatggtgcaagtttgcaagaaaagtagttgggttcatgttgtactcatgcaagagacttaaacttttttgtatact- |
31761778 |
T |
|
| Q |
101 |
gatctctatagaattagatgtaaaaatacaacaataattttttgaaggaaaaatacaacaataattaaaaagcgataattttgtaacatactaaaataca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
31761777 |
---ctctatagaattagatgtaaaaatacaacaataattttttgaaggaaaaatacaacaataattaaaaagcgataattttgtaacatgctaaaatata |
31761681 |
T |
|
| Q |
201 |
gatccttctatatt |
214 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
31761680 |
gatccttctttatt |
31761667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 31761654 - 31761600
Alignment:
| Q |
206 |
ttctatattaatttcaaacttattatgagttaaattatacgtgcatcatattcat |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31761654 |
ttctatattaatttcaaacttattatgagttaaattataagtgcatcatattcat |
31761600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 31754213 - 31754159
Alignment:
| Q |
206 |
ttctatattaatttcaaacttattatgagttaaattatacgtgcatcatattcat |
260 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| || ||||||||||| |
|
|
| T |
31754213 |
ttctatattaatttcaaacttattttgagttcaattatagttgaatcatattcat |
31754159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University