View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11643_high_2 (Length: 573)
Name: NF11643_high_2
Description: NF11643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11643_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 569
Target Start/End: Original strand, 39908154 - 39908705
Alignment:
| Q |
19 |
gtttaacccccatctcattaccttggtgagttgcgttaatattattannnnnnnatcaaggtgagttgcactaattaataattcacgttaagccaatttt |
118 |
Q |
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| T |
39908154 |
gtttaacccccatctcattaccttggtgagttgcgttaatattattatttttttatcaaggtgagttgcactaattaataattcacgttaagccaatttt |
39908253 |
T |
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| Q |
119 |
ttattttgcatttggatccaacatcgttaaccttgttcctctgaccttaatttctccatgtggtagccaagaagagacatatatagcctaaccaaagggc |
218 |
Q |
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| T |
39908254 |
ttattttgcatttggatccaacatcgttaaccttgttcctctgaccttaatttctccatgtggtagccaagaagagacatatatagcctaaccaaagggc |
39908353 |
T |
|
| Q |
219 |
tagttgtttggtatcaagcctacactattggttgtgcttagcaactaattgcgattagtatataatcaaattgttagagaccaacctgtataacnnnnnn |
318 |
Q |
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| T |
39908354 |
tagttgtttggtatcaagcctacactattggttgtgcttagcaactaattgtgattagtatataatcaaattgttagagaccaacctgtataacaaaaaa |
39908453 |
T |
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| Q |
319 |
ntagggaacaagatctcatgccgttgannnnnnncataggtgttttgttcctaattgttttcttctttatttcaaggtgtgaaacaaacacataaacatg |
418 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39908454 |
atagggaacaagatctcatgccgttgatttttttcataggtgttttgttcctaattgttttcttctttatttcaaggtgtgaaacaaacacataaacatg |
39908553 |
T |
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| Q |
419 |
atacgtgtcaatgaagctacacatgttcttcttcttgattggttttcaaaacatcatt-aannnnnnnnatcatatggttttctatttgaacgatgccgt |
517 |
Q |
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| T |
39908554 |
atacgtgtcaatgaagctacacatgttcttcttcttgattggttttcaaaacatcattaaattttttttatcatatggttttctatttgaacgatgccgt |
39908653 |
T |
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| Q |
518 |
ggtccttcctttgggctttgggtctttttctagggtatatttcttctctctc |
569 |
Q |
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| T |
39908654 |
ggtccttcctttgggctttgggtctttttctagggtatatttcttctctctc |
39908705 |
T |
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