View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11643_high_3 (Length: 543)
Name: NF11643_high_3
Description: NF11643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11643_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 1538130 - 1537850
Alignment:
| Q |
19 |
aaacatccttgttgctcatactttattgtatgacatctacctattcttcacaagagctgaatttaatgaattgtgtgggtatgtctagtcatctggcagg |
118 |
Q |
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| T |
1538130 |
aaacatacttgttgctcatactttattgtatgacatctacctattcttcacaagagctgaatttaatgaattgtgtgggtatgtctagtcatctggcagg |
1538031 |
T |
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| Q |
119 |
agatgcatcagttcattccaaaccaatttcaaaagccagaaactcttttaacctaactaagttgcttacaaatatttaggtaacaccaccatatccatat |
218 |
Q |
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| T |
1538030 |
agatgcatcagtacattccaaaccaatttcaaaagccagaaactcttttaacctaactaagttgcttagaaatatttaggtaacaccacc------atat |
1537937 |
T |
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| Q |
219 |
gcattcgcatgatcttaacaaagaccgacgcatcattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgggct |
306 |
Q |
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| T |
1537936 |
gcattcccatgatcttaacaaaga-cgaagcatcattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgggct |
1537850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 359 - 525
Target Start/End: Complemental strand, 1537830 - 1537663
Alignment:
| Q |
359 |
ttctgattgcaa-cgctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaagc |
457 |
Q |
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| T |
1537830 |
ttctgattgcaaacgctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaagc |
1537731 |
T |
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| Q |
458 |
gtgttgatataatttccggctttcaaccatcttgtttccatcattatcaggattatcatgtgcttctt |
525 |
Q |
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| T |
1537730 |
gtgttgatataatttccggctttcaaccatcttgtttccatcattatcaggattatcatgtgcttctt |
1537663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 456
Target Start/End: Original strand, 46641786 - 46641851
Alignment:
| Q |
391 |
tgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
456 |
Q |
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| T |
46641786 |
tgtttctagtgctttgtctcctcagatttatatcagcctgtttttccaaagaatcaacatcacaag |
46641851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 372 - 456
Target Start/End: Original strand, 46172995 - 46173079
Alignment:
| Q |
372 |
gctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
456 |
Q |
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| T |
46172995 |
gctctaactgtcaacggtctgtttctagtgctctgtctcctgggatttatatcaggctgttgttccaaagaaccaacatcacaag |
46173079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 46620412 - 46620350
Alignment:
| Q |
252 |
cattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgggctgtctggat |
314 |
Q |
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| T |
46620412 |
cattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggat |
46620350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 46639130 - 46639067
Alignment:
| Q |
252 |
cattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgggctgtctggatg |
315 |
Q |
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| T |
46639130 |
cattattttgcctcatgtacgagccttgcgacaaggattgaaaggatcttggtgtgtctggatg |
46639067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 46641619 - 46641701
Alignment:
| Q |
218 |
tgcattcgcatgatcttaacaaagaccgacgcatcattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatctt |
301 |
Q |
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| T |
46641619 |
tgcattcccatgatctgaacaatgac-gacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctt |
46641701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 456
Target Start/End: Complemental strand, 46630788 - 46630704
Alignment:
| Q |
372 |
gctctaactttcaatggtttgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
456 |
Q |
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| T |
46630788 |
gctctaactgtcaatggtctttttctattgctctgtctcctcggatttatatcaggctgttgttccaacgaaccaacatcacaag |
46630704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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