View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11643_low_1 (Length: 604)
Name: NF11643_low_1
Description: NF11643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11643_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 185 - 402
Target Start/End: Complemental strand, 12058257 - 12058041
Alignment:
| Q |
185 |
ataagaaagcaatggatgtaaattagatctataagctgaaactgagactaaatggtgaaattgctaagtataaggtaaagttggtggcaagaggtttcct |
284 |
Q |
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| T |
12058257 |
ataagaaagcaatggatgtaaattaaatctataagctgaaactgagactaaatggtgaaattgctaagtataaggtaaagttggtggcaagaggtttcct |
12058158 |
T |
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| Q |
285 |
ttgaaatccaggtattggtttcaatgaggtatatgcactagttgtaaggcttgaaacaattagaatagttgtggccataacaacatataaaggttggaag |
384 |
Q |
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| T |
12058157 |
ttgaaatccaggtattggtttcaatgaggtatatgcactagttgtaaggcttgaaacaatta-aatagttgtggccataacaacatataaaggttggaag |
12058059 |
T |
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| Q |
385 |
atgcattaccttgatgta |
402 |
Q |
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| T |
12058058 |
atgcattaccttgatgta |
12058041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 12059594 - 12059402
Alignment:
| Q |
1 |
tgcaagaagatcaagtagttgatgaggatggtagtatgata----ggggaattgatgatggttgaaacaaaaccaatcaacttgaatgaagcaatgaagg |
96 |
Q |
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| T |
12059594 |
tgcaagaagatcaagcagttgatgaggatggtagtatgatatataggggaagttatgatggttgaaacaaaaccaatcaacttgaatgaagcaatgaagg |
12059495 |
T |
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| Q |
97 |
attcaaattggttagtagttatgaaattggagtttaaatacatagagaagaatagaacatgcgagcagtgagcttgtaatcgggtatgataag |
189 |
Q |
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| T |
12059494 |
attcaaattggttagtagttatgaaattggagtttaaatacatagagaagaatagaacatgtgagcagtgagcttgtaatcgggtatgataag |
12059402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 398 - 590
Target Start/End: Complemental strand, 12054523 - 12054332
Alignment:
| Q |
398 |
atgtaaagtatacatttttgaatggtcctttagatgaagaaccttgagtgaagaaaccaccaag-ttttgagatcaaagcacaagaagggaagatgtata |
496 |
Q |
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| T |
12054523 |
atgtaaagtatacatttttgaatggtcctttagatggagaaccttgagtcaagaaaccaccaagtttttgagatcaaagcacaagaagggaa---gtata |
12054427 |
T |
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| Q |
497 |
gattgggaaaaaatatgtatcccttaaagtaggcccccagtgctgga-ttttttgttgttgatatctttatcattaaatcatgattcactaaatg |
590 |
Q |
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| T |
12054426 |
gattgggaaaagctatgtatcccttaaagtaggcccccagtgctggatttttttgttgttgatatctttatcattaaatcatgattcactaaatg |
12054332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 214 - 432
Target Start/End: Original strand, 6133658 - 6133878
Alignment:
| Q |
214 |
tataagctgaaactgagactaaatggtgaaattgctaagtataaggtaaagttggtggcaagaggtttcctttgaaatccaggtattggtttcaatgagg |
313 |
Q |
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| T |
6133658 |
tataagctaaaattgagaccaaatggtgaaatttctaa-tataaggaaaaactggtagcaagaggtttccttcaaaatctaggtattgatttaaatgagg |
6133756 |
T |
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| Q |
314 |
tatatgcactagttgtaa---ggcttgaaacaattagaatagttgtggccataacaacatataaaggttggaagatgcattaccttgatgtaaagtatac |
410 |
Q |
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| T |
6133757 |
attatgcacaagttgcaacaaggcttaaaacaattagaatagtggttgccataacaagatataaaggttggaaaatgcatcaacttgatgtaaagtctgc |
6133856 |
T |
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| Q |
411 |
atttttgaatggtcctttagat |
432 |
Q |
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|||||| |||||||| |||||| |
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| T |
6133857 |
attttttaatggtccattagat |
6133878 |
T |
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