View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11643_low_10 (Length: 332)
Name: NF11643_low_10
Description: NF11643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11643_low_10 |
 | |
|
| [»] scaffold1064 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 9238489 - 9238192
Alignment:
| Q |
18 |
atattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9238489 |
atattgagactagatttcgtttcatttggaagcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac |
9238390 |
T |
|
| Q |
118 |
aa-gactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaatatgaat |
216 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
9238389 |
aaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaaggggaagtattagaatatgaat |
9238290 |
T |
|
| Q |
217 |
acataattggttagatataatattaatgtgattcacattgcaagcataatatctattcttctctttcagttttacaactttatttttcaatttctgtc |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9238289 |
acatcattggttagatataatattaatgtgattcacattgcaagcataatctctattcttctctttcagttttacaactttatttttctatttctgtc |
9238192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 26905078 - 26905298
Alignment:
| Q |
20 |
attgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa |
119 |
Q |
| |
|
|||||||||||||| | |||||| || |||| ||| ||||| ||||||||| | || |||||||||| | || ||||||||||| ||||||||||| |
|
|
| T |
26905078 |
attgagactagattccacttcattggggagcagatgaataatgaaatgattgagctacattattgtcctatagaactgcagcttgcatgtggctttacaa |
26905177 |
T |
|
| Q |
120 |
-gactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaatatgaatac |
218 |
Q |
| |
|
| ||||||||||||||| |||| ||||||| ||||| |||||||||||||| || ||| ||||||||| |||||| |||||||||||| |||| ||||| |
|
|
| T |
26905178 |
aggctttgaagcttgacaaatttaaatttttaaggaagaaacttggtgttgttaatatttagcagttatgaattaatggggagtattagtatattaatac |
26905277 |
T |
|
| Q |
219 |
ataattggttagatataatat |
239 |
Q |
| |
|
|||| || | ||||||||||| |
|
|
| T |
26905278 |
ataactgttgagatataatat |
26905298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 5706922 - 5707123
Alignment:
| Q |
23 |
gagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aaga |
121 |
Q |
| |
|
||||| ||||| | ||||||| || |||||||||||||||| ||||||||| |||| || || || ||| || | || ||||| ||||||||||| || |
|
|
| T |
5706922 |
gagaccagattccatttcattagggagcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatg |
5707021 |
T |
|
| Q |
122 |
ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaatatgaatacata |
221 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||| ||| | |||| | || ||||||||||||| ||||| |||||||||| |||||| ||| ||| |
|
|
| T |
5707022 |
cagtgaagcttgacaaatttgaatttgtgaggaagaaattaagtgtatttaatattcagcagttat-gattaa-ggggagtattggaatattaatcaata |
5707119 |
T |
|
| Q |
222 |
attg |
225 |
Q |
| |
|
|||| |
|
|
| T |
5707120 |
attg |
5707123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 65 - 311
Target Start/End: Complemental strand, 2417 - 2171
Alignment:
| Q |
65 |
atgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa-gactttgaagcttgacatatttgaatttttgaggaaaaaacttg |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
2417 |
atgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgaaatattttaatttttgaggaaaaaacttg |
2318 |
T |
|
| Q |
164 |
gtgttgtgaacattcagcagttataaattaagggggagtattagaatatgaatacataattggttagatataatattaatgtgattcacattgcaagcat |
263 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
2317 |
gtgttgtgaacattaagcagttatgaattaagggggagtattagaatattaatacataattggttagatataatattaatgagattcacattgtaagcat |
2218 |
T |
|
| Q |
264 |
aatatctattcttctctttcagttttacaactttatttttcaatttct |
311 |
Q |
| |
|
||| |||| | |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2217 |
aatctcta-tattctctttcagttttacaactttatttttctatttct |
2171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 38099543 - 38099340
Alignment:
| Q |
20 |
attgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa |
119 |
Q |
| |
|
|||||||||||||| | ||||||| || ||| ||||||||||||||||||||| | || |||||||||||| ||||| |||| ||| |||||||||||| |
|
|
| T |
38099543 |
attgagactagattccatttcattagggagcgagtgactaatggtatgattgaactacaatattgtcctacagaattgtagctagcatatggctttacaa |
38099444 |
T |
|
| Q |
120 |
-gactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaatatgaatac |
218 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
38099443 |
aggctttgaagcttggcatatttgaatttttgaggaagaaacttggtgttgttaacattcagcaattatgaattaagggggagtgttagaatattaatac |
38099344 |
T |
|
| Q |
219 |
ataa |
222 |
Q |
| |
|
|||| |
|
|
| T |
38099343 |
ataa |
38099340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 302088 - 302284
Alignment:
| Q |
20 |
attgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa |
119 |
Q |
| |
|
|||||||| ||||| ||||||||| |||| ||||||||||| ||||||||| |||| || || || ||| || | || ||||| ||||| ||||||| |
|
|
| T |
302088 |
attgagaccagattcaatttcatttgagagcaggtgactaatggaatgattgagctgcactactgccccacaaaactacaacttgctgatggttttacaa |
302187 |
T |
|
| Q |
120 |
ga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaatatgaat |
216 |
Q |
| |
|
| | |||||||||||| ||||||||| |||||||| ||| | |||||| | || ||||| ||||||| |||||||||||||||| |||||||||| |
|
|
| T |
302188 |
aagcaatgaagcttgacagatttgaattcttgaggaagaaattaggtgtttttaatattcaacagttat-gattaagggggagtattggaatatgaat |
302284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 212
Target Start/End: Complemental strand, 39190997 - 39190839
Alignment:
| Q |
54 |
tgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgag |
152 |
Q |
| |
|
|||||||||| ||||||||| |||| || || || ||| || |||| ||||| ||||| ||| ||| | | |||||||||||| ||||||||| ||||| |
|
|
| T |
39190997 |
tgactaatggaatgattgagctgcactactgccccacagaactgcaacttgctgatggttttgcaaaagcagtgaagcttgacagatttgaattcttgag |
39190898 |
T |
|
| Q |
153 |
gaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaatat |
212 |
Q |
| |
|
||| ||| | |||||| | || || |||||||||| ||||||||||||||||||||||| |
|
|
| T |
39190897 |
gaagaaattaggtgtttttaatatgcagcagttat-gattaagggggagtattagaatat |
39190839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 3461563 - 3461684
Alignment:
| Q |
48 |
agcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa-gactttgaagcttgacatatttgaatt |
146 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||| ||||| || ||| || |||| ||||| ||||| ||||||| | | | |||||||||||||||||||| |
|
|
| T |
3461563 |
agcatgtgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttacaaaggcagtaaagcttgacatatttgaatt |
3461662 |
T |
|
| Q |
147 |
tttgaggaaaaaacttggtgtt |
168 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
3461663 |
cttgagaaaggaacttggtgtt |
3461684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 6414352 - 6414556
Alignment:
| Q |
20 |
attgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-a |
118 |
Q |
| |
|
|||| ||||||||| ||||||| || |||| ||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||| ||||| | |
|
|
| T |
6414352 |
attgggactagattctatttcattagggagcaggtgactaatggagtgattgagttgcattactgtcctacagaattgcagcttgcagatggttttacaa |
6414451 |
T |
|
| Q |
119 |
agactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaa-gggggagtattagaatatgaata |
217 |
Q |
| |
|
|| ||||||||||||| | |||| || |||||||||| ||||||| |||||| |||||||||||||||| |||||| |||||||||||||||| | |||| |
|
|
| T |
6414452 |
aggctttgaagcttgatagatttaaacttttgaggaagaaacttgttgttgttaacattcagcagttattaattaaggggggagtattagaatgttaata |
6414551 |
T |
|
| Q |
218 |
cataa |
222 |
Q |
| |
|
||||| |
|
|
| T |
6414552 |
cataa |
6414556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 37786979 - 37786815
Alignment:
| Q |
48 |
agcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatt |
146 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| || || || ||| || | || ||||| ||||| ||||||| | | |||||||||||| ||||||||| |
|
|
| T |
37786979 |
agcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacagatttgaatt |
37786880 |
T |
|
| Q |
147 |
tttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaatat |
212 |
Q |
| |
|
|||||||| ||| | |||||| | || ||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
37786879 |
cttgaggaataaattaggtgtttttaatattcagcagttat-gattaagggggagtattggaatat |
37786815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 26794277 - 26794222
Alignment:
| Q |
239 |
ttaatgtgattcacattgcaagcataatatct--attcttctctttcagttttaca |
292 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
26794277 |
ttaatgagattcacattgcaagcataatctctctattcttctctttcagttttaca |
26794222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 14233865 - 14234014
Alignment:
| Q |
20 |
attgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-a |
118 |
Q |
| |
|
|||||||| ||||| | ||||||| || |||| ||||||||||| ||||||||| |||| |||||||| || | |||| ||||||||||| ||||| | |
|
|
| T |
14233865 |
attgagaccagattccatttcattagggagcaggtgactaatggaatgattgaggtgcaatattgtcccactgagctgcaacttgcagatggttttacta |
14233964 |
T |
|
| Q |
119 |
agactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgtt |
168 |
Q |
| |
|
|| | | || ||||||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
14233965 |
aggcagtaaaacttgacagatttgaattttttaggaagaaacttggtgtt |
14234014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 31000575 - 31000638
Alignment:
| Q |
139 |
tttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagt |
202 |
Q |
| |
|
||||||||||||||||| ||||||| |||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
31000575 |
tttgaatttttgaggaagaaacttgatgtttttaacattcagcagttatgaattaagggggagt |
31000638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 14234185 - 14234237
Alignment:
| Q |
239 |
ttaatgtgattcacattgcaagcataatatct--attcttctctttcagtttt |
289 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
14234185 |
ttaatgagattcaaattgcaagcataatgtctctattcttctctttcagtttt |
14234237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 59499 - 59425
Alignment:
| Q |
239 |
ttaatgtgattcacattgcaagcataata--tctattcttctctttcagttttacaactttatttttcaatttct |
311 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
59499 |
ttaatgagattcacattgcaagcataatcactctattcttctttttcagttttacaactttattttgctatttct |
59425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 49100 - 49257
Alignment:
| Q |
48 |
agcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatt |
146 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| || || || ||| || | || ||||| ||||| ||||||| | | |||||||||||| ||||||||| |
|
|
| T |
49100 |
agcatgtgactaatggaatgattgagttgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaatt |
49199 |
T |
|
| Q |
147 |
tttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtatt |
205 |
Q |
| |
|
|||||||| ||| | |||||| | || |||||| |||||| |||||||||||||||| |
|
|
| T |
49200 |
cttgaggaagaaattaggtgttcttaatattcagtagttat-gattaagggggagtatt |
49257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 296823 - 297016
Alignment:
| Q |
20 |
attgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa |
119 |
Q |
| |
|
|||||||| ||||| | ||||||| || |||| ||||||||||| ||||| |||||||| || || || ||| || | || |||| ||||| ||||||| |
|
|
| T |
296823 |
attgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggttttacaa |
296922 |
T |
|
| Q |
120 |
ga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtg-ttgtgaacattcagcagttataaattaagggggagtattagaatat |
212 |
Q |
| |
|
| | ||||||||||| ||||||||| |||||||| ||| | |||| || | || ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
296923 |
aagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttat-gattaagggggagtattagaatat |
297016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 30380402 - 30380606
Alignment:
| Q |
20 |
attgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa |
119 |
Q |
| |
|
|||||||| ||||| | ||||||| | |||| ||||||||||| ||||||||| | || || | | | ||| || |||| |||||| |||| ||||||| |
|
|
| T |
30380402 |
attgagaccagattccatttcattagagagcaggtgactaatggaatgattgagctacactactatacaacagaactgcaacttgcatatgg-tttacaa |
30380500 |
T |
|
| Q |
120 |
ga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaatatgaatac |
218 |
Q |
| |
|
| | ||||||||||||||||| |||||||||||||||||||||||||| | | |||| ||||||| |||||||| ||||||||||||| ||| |
|
|
| T |
30380501 |
aagcagtgaagcttgacatattttaatttttgaggaaaaaacttggtgtttttgatgttcaacagttat-gattaagggaaagtattagaatattaatca |
30380599 |
T |
|
| Q |
219 |
ataattg |
225 |
Q |
| |
|
||||||| |
|
|
| T |
30380600 |
ataattg |
30380606 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 28248938 - 28249095
Alignment:
| Q |
48 |
agcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatt |
146 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| || || || ||| || | || ||||| ||||| ||||||| | | |||||||||||| ||||||||| |
|
|
| T |
28248938 |
agcatgtgactaatggaatgattgagttgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaatt |
28249037 |
T |
|
| Q |
147 |
tttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtatt |
205 |
Q |
| |
|
|||||||| ||| | |||||| | || |||||| |||||| |||||||||||||||| |
|
|
| T |
28249038 |
cttgaggaagaaattaggtgttcttaatattcagtagttat-gattaagggggagtatt |
28249095 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 206
Target Start/End: Complemental strand, 29011122 - 29010973
Alignment:
| Q |
58 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaa |
156 |
Q |
| |
|
|||||| ||| ||||| |||||| |||||||||| || |||| |||||| |||| ||||| | | ||||||| ||||||| |||| | ||||| ||||| |
|
|
| T |
29011122 |
taatggaatggttgagctgcagttttgtcctacagaactgcaacttgcatatggttttactaaagctttgaaacttgacaaatttaagttttttaggaag |
29011023 |
T |
|
| Q |
157 |
aaacttggtgttgtgaacattcagcagttataaattaagggggagtatta |
206 |
Q |
| |
|
|||||||||||| | | ||||| ||||||| ||||||| ||||||||| |
|
|
| T |
29011022 |
aaacttggtgttttcagtattcaacagttatgaattaagatggagtatta |
29010973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 11187090 - 11186979
Alignment:
| Q |
99 |
agcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaaggg |
197 |
Q |
| |
|
||||||||||||| ||||||| | | |||| ||| || ||||||||||||||||||| ||||| ||| || | | |||||||||||| | ||||||| |
|
|
| T |
11187090 |
agcttgcagatggttttacaaaagcagtgaaacttcacgtatttgaatttttgaggaagaaactaggtatttttgatgttcagcagttatga-ttaaggg |
11186992 |
T |
|
| Q |
198 |
ggagtattagaat |
210 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11186991 |
ggagtattagaat |
11186979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 50778510 - 50778361
Alignment:
| Q |
20 |
attgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa |
119 |
Q |
| |
|
|||||||| ||||| | ||||||| | |||| ||||||||| | ||||||||| |||| ||||| || ||| || |||| ||||| ||||||||||||| |
|
|
| T |
50778510 |
attgagaccagattccatttcattagagagcaggtgactaattgaatgattgagctgcactattgccccacagaactgcaacttgctgatggctttacaa |
50778411 |
T |
|
| Q |
120 |
-gactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgtt |
168 |
Q |
| |
|
| | | |||||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
50778410 |
aggcagtaaagcttgacagatttgaattttttaggaaggaacttggtgtt |
50778361 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 18641351 - 18641150
Alignment:
| Q |
23 |
gagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aaga |
121 |
Q |
| |
|
||||| ||||| | ||||||| || |||||||||||||||| ||||||||| |||| || || || ||| || | || ||||| ||||||||||| || |
|
|
| T |
18641351 |
gagaccagattccatttcattagggagcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatg |
18641252 |
T |
|
| Q |
122 |
ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaatatgaatacata |
221 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||| ||| | |||| | || ||||||||||||| ||||| |||||||||| |||||| ||| ||| |
|
|
| T |
18641251 |
cagtgaagcttgacaaatttgaatttgtgaggaagaaattaagtgtatttaatattcagcagttat-gattaa-ggggagtattggaatattaatcaata |
18641154 |
T |
|
| Q |
222 |
attg |
225 |
Q |
| |
|
|||| |
|
|
| T |
18641153 |
attg |
18641150 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 51810651 - 51810695
Alignment:
| Q |
246 |
gattcacattgcaagcataatatc--tattcttctctttcagttt |
288 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51810651 |
gattcacattgcaagcataatatctttattcttctctttcagttt |
51810695 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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