View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11643_low_14 (Length: 269)
Name: NF11643_low_14
Description: NF11643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11643_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 41126115 - 41126359
Alignment:
| Q |
18 |
cagtaacctccatgaaaatcgtctgcaacccattgtcagcagatccatgcaaaaatatcttcaaccccttttcggtatcatcaactttggaaaccttaga |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41126115 |
cagtaacctccatgaaaattgtctgcaacccattgtcagcagatccatgcaaaaatatcttcaaccccttttcggtatcatcaactttggaaaccttaga |
41126214 |
T |
|
| Q |
118 |
agcgccccatttaaacggtagaacagagaaacacacgggttcgccatcgttatcttcgagatgataattggttacatacaaagactgaaactcgatttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41126215 |
agcgccccatttaaacggtagaacagagaaacacacgggttcgccatcgttatcttcgagatgataattggttacatacaaagactgaaactcgatttca |
41126314 |
T |
|
| Q |
218 |
gattcagtttcatcccttaatgtcgtgaatttccttttcatctca |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41126315 |
gattcagtttcatcccttaatgtcgtgaatttccttttcatctca |
41126359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University