View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11643_low_15 (Length: 252)
Name: NF11643_low_15
Description: NF11643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11643_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10116589 - 10116348
Alignment:
| Q |
1 |
ttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10116589 |
ttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgaga |
10116490 |
T |
|
| Q |
101 |
gttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10116489 |
gttttagaaactatgtcaatctggtgttgcgggaaacggtctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaa |
10116390 |
T |
|
| Q |
201 |
ttaaaaacatatatgattatgtaagtagccttagtttctctg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10116389 |
ttaaaaacatatatgattatgtaagtagccttagtttctctg |
10116348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 45810322 - 45810121
Alignment:
| Q |
1 |
ttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgaga |
100 |
Q |
| |
|
||||| |||||| || ||||| ||||||||||| |||| |||| ||||| |||| || |||| ||||| |||| ||||||||||| ||||||| | | |
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| T |
45810322 |
ttcattaaacctcacgacttgcactatgcgggactttgcatttgcaggcttacaacgtaatcatgttatgttagcaaggtttattctgaagaatgcaaaa |
45810223 |
T |
|
| Q |
101 |
gttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaa |
200 |
Q |
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||||||||||||||| |||| ||||| || | ||||| ||||||||||||| | | ||||| |||||||||||||||||| ||| |||| ||||||||| |
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| T |
45810222 |
gttttagaaactatgacaatttggtgcagcagaaaacggtctaaaatagaaaaactattatcttcatgtccaagggcttctgcaaaatgtcaactttcaa |
45810123 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
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|
| T |
45810122 |
tt |
45810121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 12105514 - 12105715
Alignment:
| Q |
1 |
ttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgaga |
100 |
Q |
| |
|
|||||||||||||| ||||||||| || || || |||| | || |||||||||| |||||||||||||| |||| | |||||||| ||||| | | | |
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| T |
12105514 |
ttcatcaaaccttagaacttgtacgatccgtgactttgcaattggaggcctacagagttatcacattatgttagcaaaatttattctgaagaattcaaca |
12105613 |
T |
|
| Q |
101 |
gttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||| ||| ||||||||||| ||| |||| ||| |||| |||||| |||||||| ||||||||| |
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| T |
12105614 |
gttttagaaaatatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgattaacctcgtgttcaagagcttctgcaacatgtcaactttcaa |
12105713 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
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|
| T |
12105714 |
tt |
12105715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 1445771 - 1445672
Alignment:
| Q |
100 |
agttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca |
199 |
Q |
| |
|
||||||||||||||||||||| ||||| | | | ||||| ||| | |||||||||| || |||||||| ||||||||||| ||||||||||| ||||| |
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|
| T |
1445771 |
agttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctcatgttcaagggcttctgcaacatgtaaattttca |
1445672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 965283 - 965079
Alignment:
| Q |
3 |
catcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgagagt |
102 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||| || | |||||| ||| || |||||||||||||||| || |||||||| |||||||| ||||| |
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|
| T |
965283 |
catcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagt |
965184 |
T |
|
| Q |
103 |
tttagaaactatgtcaatctggtgttgcgggaaacgctcta------aaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactt |
196 |
Q |
| |
|
|||||||||||||||||| ||||| | | |||| | |||| || |||||||||| ||||| ||||||| |||||||||||| ||||| |||| |
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|
| T |
965183 |
tttagaaactatgtcaatgtggtgctacacgaaagggtctaaagtagaattagaaagagtattatcatcatgtcatagggcttcttcagcatgtcaactc |
965084 |
T |
|
| Q |
197 |
tcaat |
201 |
Q |
| |
|
||||| |
|
|
| T |
965083 |
tcaat |
965079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 821340 - 821570
Alignment:
| Q |
1 |
ttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgaga |
100 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |||| | || |||||| ||| ||| ||||||||||| |||| | |||||||| ||||||||||| |
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|
| T |
821340 |
ttcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgaga |
821439 |
T |
|
| Q |
101 |
gttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca- |
199 |
Q |
| |
|
||||||||||||||| |||||||| | | |||| ||| |||||||||| ||||| |||| |||||||||||| |||||||| |||||||| |
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|
| T |
821440 |
gttttagaaactatgacaatctggagcaacaataaacaatctgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcat |
821539 |
T |
|
| Q |
200 |
---attaaaaacatatatgattatgtaagta |
227 |
Q |
| |
|
||| | |||||||| ||||||||||||| |
|
|
| T |
821540 |
tttattgataacatatacgattatgtaagta |
821570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 410490 - 410685
Alignment:
| Q |
7 |
aaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgagagtttta |
106 |
Q |
| |
|
||||||||||||||| ||||| ||||| || | |||| |||||||||| || |||||||||| |||| | |||||||| ||||||| ||||||||| |
|
|
| T |
410490 |
aaaccttacaacttgcactattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagtttta |
410589 |
T |
|
| Q |
107 |
gaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaatt |
202 |
Q |
| |
|
||||||| | |||| ||| | ||||| |||||| |||||||| | |||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
410590 |
cgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaactttcaatt |
410685 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 1403740 - 1403941
Alignment:
| Q |
1 |
ttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgaga |
100 |
Q |
| |
|
||||| ||||||||||||||| | ||||||||| |||| || || || ||| || ||| ||||||| |||| ||||||||||| || ||||| ||| |
|
|
| T |
1403740 |
ttcattaaaccttacaacttgcaatatgcgggactttgttgttgtagaccaacaccgtaatcgcattatgttagcaaggtttattctggataatgcaaga |
1403839 |
T |
|
| Q |
101 |
gttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| | | || | | ||||| ||||||||| |||||||||||||||| ||| ||| |||||||| ||||| ||| |
|
|
| T |
1403840 |
gttttagaaactatgtcaatctggtgctacaagagatggcctaaagcagaaagagtattatcctcatgtccaaaggcatctgcaacatgtcaacttacaa |
1403939 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
1403940 |
tt |
1403941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 1400022 - 1400220
Alignment:
| Q |
1 |
ttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgaga |
100 |
Q |
| |
|
||||| ||||||||||||||| | ||||||||| ||||| | ||||| ||| || ||| ||||||| |||| ||||||||||| ||||||| ||| |
|
|
| T |
1400022 |
ttcattaaaccttacaacttgcaatatgcgggactttga---tgaaggccaacaacgtaatcgcattatgttagcaaggtttattctgcagaatgcaaga |
1400118 |
T |
|
| Q |
101 |
gttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaa |
200 |
Q |
| |
|
||||||||||||||| |||||||||| | | || | | | ||| ||||||||| |||| ||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
1400119 |
gttttagaaactatgccaatctggtgctacatgagatggcccaaagcagaaagagtattattctcatgtccaagggcttctgtaacatgtcaactttcaa |
1400218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 973848 - 973727
Alignment:
| Q |
3 |
catcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgagagt |
102 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||| || | |||||| ||| || ||||||||||| |||| || |||||||| ||||| || ||||| |
|
|
| T |
973848 |
catcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgttagcaagatttattctggagaacgcaagagt |
973749 |
T |
|
| Q |
103 |
tttagaaactatgtcaatctgg |
124 |
Q |
| |
|
|||| |||||||| ||||||| |
|
|
| T |
973748 |
tttacaaactatgaaaatctgg |
973727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 957920 - 957801
Alignment:
| Q |
1 |
ttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgaga |
100 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |||| | || |||||| ||| || |||| |||| |||| |||||||| ||||||||||| |
|
|
| T |
957920 |
ttcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaaagtaatcatcttattttagcattatttattctgaagaatgcgaga |
957821 |
T |
|
| Q |
101 |
gttttagaaactatgtcaat |
120 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
957820 |
gttttagaaactttgtcaat |
957801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 48675153 - 48675098
Alignment:
| Q |
144 |
aaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca |
199 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
48675153 |
aaatagaaagggaattatcctcatgtccaagggcctctgcaacatgtcaactttca |
48675098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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