View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11643_low_16 (Length: 251)
Name: NF11643_low_16
Description: NF11643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11643_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 25541440 - 25541203
Alignment:
| Q |
1 |
ctttattggaaaaatttacattattttaattaccttccttgatctaatctgtttgagagcagaatcaagttgatgctccaaatgttgaagctctttcata |
100 |
Q |
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| T |
25541440 |
ctttattggaaaaatttacattattttaattaccttccttgatctaatctgtttgagagcagaatcaagttgatgctccaaatgctgaagctctttcata |
25541341 |
T |
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| Q |
101 |
cttaggcaatcaagttcttcacccataaaattccttcaaaataaataattattatttaaggtaaaacatttgttacatatattcctttaattagattaga |
200 |
Q |
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| T |
25541340 |
cttaggccatcaagttcttcacccataaaattccttcaaaataaataattattatttaaggtaaaacatttgttacatatattcctttaattagattaga |
25541241 |
T |
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| Q |
201 |
tggtgtaatcccttgtttacaacaaaacttttatacct |
238 |
Q |
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| T |
25541240 |
tggtgcaatcccttgtttacaacaaaacttatatacct |
25541203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 45693817 - 45693751
Alignment:
| Q |
30 |
ttaccttccttgatctaatctgtttgagagcagaatcaagttgatgctccaaatgttgaagctcttt |
96 |
Q |
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| T |
45693817 |
ttaccttccgtgatctaatttgtttgagagctgaatcaagttgttgttccaaactttgaagctcttt |
45693751 |
T |
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