View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11643_low_5 (Length: 494)
Name: NF11643_low_5
Description: NF11643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11643_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 28 - 331
Target Start/End: Complemental strand, 4211401 - 4211109
Alignment:
| Q |
28 |
acggcgtaggatcacatcttgagggtaatatttgtattttgaaggatgtaagggaatgacatggtcggaggtggttgtaggatcttatctctctaaggtt |
127 |
Q |
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| T |
4211401 |
acggcgtaagatcacatcttgagggtaatatttgtattttgaaggatgtaagggaatgacatgatcggaggtggttgtaggatcttctctctctaaggtt |
4211302 |
T |
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| Q |
128 |
aaaaatcaacttcatctgttatgctcaattcaatttatctttcaattatcttttagttaaatgtatttaaatacaaatcaacttatattaatcttttaac |
227 |
Q |
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| T |
4211301 |
aaaaatcaacttcatctgttatgctcaattcaatttat-----------cttttacttaaatgtatttaaatacaaatcaacttatattaatcttttaac |
4211213 |
T |
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| Q |
228 |
caaaattggttttttaaaatcaatttatttgaaaatttctgtaccaccaaagttagaagataaaacatatttcaagaaaaaataaagattaatctttata |
327 |
Q |
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| T |
4211212 |
caaaattggttttttaaaatcaatttatttgaaaaatttcgtaccaccaaaattacaagctaaaacatattttaagaaaaaagaaagattaatctttata |
4211113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 351 - 482
Target Start/End: Complemental strand, 4211121 - 4210990
Alignment:
| Q |
351 |
atctttatagttgcacttgctctccacaatcaattaatttgaagtccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcc |
450 |
Q |
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| T |
4211121 |
atctttatagttgcccttcctctccacaatcaattaatgtgaagtccttcaagaaacaacgttttaaagagatccattacatgtttatttagaacaagcc |
4211022 |
T |
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| Q |
451 |
caacttcaattccacctttaccatctctgctc |
482 |
Q |
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| T |
4211021 |
caacttcaattccacctttaccatctttgctc |
4210990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 351 - 482
Target Start/End: Complemental strand, 4234785 - 4234654
Alignment:
| Q |
351 |
atctttatagttgcacttgctctccacaatcaattaatttgaagtccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcc |
450 |
Q |
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|||| ||||||||| | || |||||||||||||||||| ||||||||||| |||||| |||||||||||| |||| |||| ||||| |||||||||| |
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| T |
4234785 |
atctctatagttgcgcatgttctccacaatcaattaatgcaaagtccttcaacaaacaaagttctaaagagattcattacatggttattaagaacaagcc |
4234686 |
T |
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| Q |
451 |
caacttcaattccacctttaccatctctgctc |
482 |
Q |
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| T |
4234685 |
caacttcaattccacctttaccatctttgctc |
4234654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 255
Target Start/End: Complemental strand, 4235093 - 4234930
Alignment:
| Q |
94 |
ggaggtggttgtag-gatcttatctctctaaggttaaaaatcaacttcatctgttatgctcaattcaatt--tatctttcaattatcttttagttaaatg |
190 |
Q |
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||||||||||||| | ||||||||||||| | | |||| ||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||| |
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| T |
4235093 |
ggaggtggttgtaacgctcttatctctctatgctcaaaattcaacttcatcggttatgctcaattcaatttatatctttcaa-tatcttttatgtaaatt |
4234995 |
T |
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| Q |
191 |
tatttaaatacaaatcaacttatattaatcttttaaccaaaattggttttttaaaatcaatttat |
255 |
Q |
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| | | |||| ||||||||||||| ||| || ||||||| || | || |||||||||||||| |
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| T |
4234994 |
tttgttaatataaatcaacttatagtaaatttgtaaccaacatcgaccttataaaatcaatttat |
4234930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 481
Target Start/End: Complemental strand, 4190114 - 4190026
Alignment:
| Q |
393 |
agtccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcccaacttcaattccacctttaccatctctgct |
481 |
Q |
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| T |
4190114 |
agtccttcaagaaacaaattgctaaagagatccattacatgcttattaagaacaagaccaatttcaaccccaccattgccatctttgct |
4190026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 4247319 - 4247248
Alignment:
| Q |
395 |
tccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcccaacttcaattccacc |
466 |
Q |
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| T |
4247319 |
tccttcatgaaacaaagtgctaaagaaattcattacatgtttattaagaacaagcccaacttcaactccacc |
4247248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 482
Target Start/End: Complemental strand, 4251754 - 4251667
Alignment:
| Q |
395 |
tccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcccaacttcaattccacctttaccatctctgctc |
482 |
Q |
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| T |
4251754 |
tccttcaagaaacaaagtgctaaagatatccattacaggtttattaagagcaagcccaacttctatccctcctttactatctttgctc |
4251667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 482
Target Start/End: Complemental strand, 4193235 - 4193145
Alignment:
| Q |
392 |
aagtccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcccaacttcaattccacctttaccatctctgctc |
482 |
Q |
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| T |
4193235 |
aagtccttcaaaaaagaaactgctaaagagatccattacaagcttattaagaacaagctcaacttcaaccccaccattgccatctttgctc |
4193145 |
T |
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