View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11643_low_6 (Length: 481)
Name: NF11643_low_6
Description: NF11643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11643_low_6 |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 9470210 - 9469753
Alignment:
| Q |
1 |
accaaccacaacatatcataaatggaacacaaatacttgctttcnnnnnnnnnnnnngactaacatgaacaagtgttgtgacaattgattcttttttaag |
100 |
Q |
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| T |
9470210 |
accaaccacaacatatcataaatggaacacaaacacttgctttcaaaaaatgaaaaagactaacatgaacaagtgttgtgacaattgattcttttttaag |
9470111 |
T |
|
| Q |
101 |
tttgaattatagaaaaatgaaatttagagaaacaaggagtcgatataaccttgaataactagttcaatcagacgttggcattgcgtcaatattccaaata |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9470110 |
tttgaat---agaaaaatgaaatttagagaaacaaggagtcgatataaccttgaataactagttcaatcagacgttggcattgcgtcaatattccaaata |
9470014 |
T |
|
| Q |
201 |
gcaacatgtttttaataaaatgaatcttattagatcttactttcatataaaatctgcctagtgatttagttttgaacaacatcaattcatcttcaaccat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9470013 |
gcaacatgtttttaataaaatgaatcttattagatcatactttcatataaaatctgcctagtgatttagttttgaacaacatcaattcatcttcaaccat |
9469914 |
T |
|
| Q |
301 |
atagaacacaaacagaataccaaaaaattcaaggatttgatgatgacgacgaagggttagtttgacgatgatgaagggtttgatgttggtggctgagacg |
400 |
Q |
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| T |
9469913 |
atagaacacaaacagaataccaaaaaattcaaggatttgatgatgacgacgaagggttagtttgacgaggatgaagggtttgatgttggtggctgaga-- |
9469816 |
T |
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| Q |
401 |
gtggagggtggttggtgaggcagtgaagacgaacatggtgtctggttttggggagttcgatgtga |
465 |
Q |
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| T |
9469815 |
--ggagggtggttggtgaggcagtgaagacgaacatggtgtctggttttggggagttcgatgtga |
9469753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 31001786 - 31001903
Alignment:
| Q |
65 |
atgaacaagtgttgtgacaattgattcttttttaagtttgaattatagaaaaatgaaatttagagaaacaaggagt-cgatataaccttgaataactagt |
163 |
Q |
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|||||||| ||||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
31001786 |
atgaacaaatgttgtgacaacttattcttctttaagtttgaat---agaaaaatgaaatttagagaaacaaggattacgatataaccttgaataactagt |
31001882 |
T |
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| Q |
164 |
tcaatcagacgttggcattgc |
184 |
Q |
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|||||| ||| |||||||||| |
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| T |
31001883 |
tcaatcggactttggcattgc |
31001903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 184
Target Start/End: Original strand, 31003405 - 31003528
Alignment:
| Q |
59 |
actaacatgaacaagtgttgtgacaattgattcttttttaagtttgaattatagaaaaatgaaatttagagaaacaaggagt-cgatataaccttgaata |
157 |
Q |
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||||| |||||||| ||||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||| ||| | | |||||| |||||||| |
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| T |
31003405 |
actaatatgaacaaatgttgtgacaacttattcttctttaagtttgaat---agaaaaatgaaatttagagaaacagggattacaatataatcttgaata |
31003501 |
T |
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| Q |
158 |
actagttcaatcagacgttggcattgc |
184 |
Q |
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| T |
31003502 |
actagttcaatcagactttggcattgc |
31003528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2530986 - 2530793
Alignment:
| Q |
1 |
accaaccacaacatatcataaatggaacacaaatacttgctttcnnnnnnnnnnnnngactaacatgaacaagtgttgtgacaattgattctttttt--- |
97 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |
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| T |
2530986 |
accaaccacaacatagcataaatggaacacaaatacttgctttcaaaacatgaaaaatactaacatgtacaagtgttgtgacaattgatttttttttttt |
2530887 |
T |
|
| Q |
98 |
-----------aagtttgaattatagaaaaatgaaatttagagaaacaaggagtcgatataaccttgaataactagttcaatcagacgttggcattgc |
184 |
Q |
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| T |
2530886 |
tttttttttttaagtttgaatt---gaaaaatgaaatttagagaaacaaggagtgg-tataaccttgaataactagttcaatcagactttgacattgc |
2530793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 38977 - 39165
Alignment:
| Q |
1 |
accaaccacaacatatcataaatggaacacaaatacttgctttcnnnnnnnnnnnnngactaacatgaacaagtgttgtgacaattgattc--------- |
91 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
38977 |
accaaccacaacatagcataaatggaacacaaatacttgctttcaaaacatgaaaaatactaacatgaa--agagttgtgacaattgatttatttttatt |
39074 |
T |
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| Q |
92 |
ttttttaagtttgaattatagaaaaatgaaatttagagaaacaaggagt-cgatataaccttga--ataactagttcaatcagacgttggcatt |
182 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||| |||||| ||||||| |||||||| |
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| T |
39075 |
ttttttaagtttgaat---agaaaaatgaaatttagagaaacaaggagtatggtataaccttgaatataattagttccatcagactttggcatt |
39165 |
T |
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