View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11644_high_14 (Length: 362)

Name: NF11644_high_14
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11644_high_14
NF11644_high_14
[»] chr7 (1 HSPs)
chr7 (18-360)||(25706353-25706695)
[»] chr4 (1 HSPs)
chr4 (17-113)||(16442078-16442174)
[»] chr5 (2 HSPs)
chr5 (22-105)||(17695291-17695374)
chr5 (22-105)||(24130831-24130914)
[»] chr1 (3 HSPs)
chr1 (23-100)||(27461014-27461091)
chr1 (22-112)||(31319433-31319522)
chr1 (23-69)||(34935200-34935246)
[»] chr2 (4 HSPs)
chr2 (23-111)||(24047587-24047675)
chr2 (27-81)||(17862618-17862672)
chr2 (22-71)||(17152357-17152406)
chr2 (28-96)||(39730656-39730724)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 25706353 - 25706695
Alignment:
Q  18 cttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaaggataaaaaactac 117  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||    
T  25706353 cttggaaggtttttgaagacaatataagttggggaaaattcatcccaagttccatgacaattcaatacggaagaacgctcgaagaaggacaaaaaactac 25706452  T
Q  118 atgattcacccctaaggggagttgtgacttttcatggtatttttgttggctaaatttgccaggtttgttatgaggcagacttaatatataccctattcat 217  Q
    || |||||||| | ||||||||||||||||||| |||||||||||||| |||||| || ||||||||||||| |||||||| ||||||||||||||||||    
T  25706453 ataattcacccttgaggggagttgtgacttttcgtggtatttttgttgactaaatctgtcaggtttgttatgtggcagactgaatatataccctattcat 25706552  T
Q  218 gtttccactttttgatatttgatcgtttgcagaattgttgaaatagataggtttcaagggttaaagtttcgtgttggtgtcaccttaatatttatatttg 317  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||  |    
T  25706553 gttcccactttttgatatttgatcgtttgcagaattgttgaaataggtaggttttaagggttaaggtttcgtgttggtgtcaccttaatatctatatcag 25706652  T
Q  318 tctctctgattggtttttgggctggtttgatgtccatctcatt 360  Q
    |||||||||||||||||||||||||||| || ||| |||||||    
T  25706653 tctctctgattggtttttgggctggtttaatatccttctcatt 25706695  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 16442174 - 16442078
Alignment:
Q  17 acttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaaggataaaaaa 113  Q
    ||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |  | ||||| | | ||||||||||||| ||||| ||||||    
T  16442174 acttggaaggtttttgaagacaatacaatttgggggaaatttatccaaagttccaagcaatttcaagacggaagaacgctcgaaaaaggacaaaaaa 16442078  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 17695374 - 17695291
Alignment:
Q  22 gaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaagg 105  Q
    |||||||||||||||||||| ||||||||| ||||| |||| |||||||| | || ||||| |   ||||||||||||| ||||    
T  17695374 gaaggtttttgaagacaatacaagttggggaaaattcatcctaagttccaaggcatttcaagaccgaagaacgctcgaaaaagg 17695291  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 24130831 - 24130914
Alignment:
Q  22 gaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaagg 105  Q
    ||||||||||||| |||||| || |||||| ||||| ||||||||||||| | || ||||| |  |||||||||| ||| ||||    
T  24130831 gaaggtttttgaatacaatacaaattggggaaaattcatcccaagttccagggcatttcaagagcaaagaacgctagaaaaagg 24130914  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 27461091 - 27461014
Alignment:
Q  23 aaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaa 100  Q
    ||||||||||||||||||| ||||| ||| | ||| ||| ||||||||| | || ||||| | |||||||||||||||    
T  27461091 aaggtttttgaagacaatacaagtttgggaatattcatcacaagttccaaggcatttcaagacgaaagaacgctcgaa 27461014  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 31319522 - 31319433
Alignment:
Q  22 gaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaaggataaaaa 112  Q
    |||| ||||||||||||||  |||| |||| |||||||||||||||| || | || ||||| ||| || |||||||||| |||||| ||||    
T  31319522 gaagttttttgaagacaatgcaagtcgggg-aaatttatcccaagtttcaaggcatttcaagatggaaaaacgctcgaaaaaggatgaaaa 31319433  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 34935246 - 34935200
Alignment:
Q  23 aaggtttttgaagacaatataagttgggggaaatttatcccaagttc 69  Q
    |||||||||||||| |||| ||||||||| ||||| |||||||||||    
T  34935246 aaggtttttgaagataatacaagttggggaaaattcatcccaagttc 34935200  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 24047587 - 24047675
Alignment:
Q  23 aaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaaggataaaa 111  Q
    ||||||| ||||||||||| ||||| ||| ||||| | ||||||||||| | || ||||| ||| || |||||||||| ||||| ||||    
T  24047587 aaggtttgtgaagacaatacaagttagggaaaattcaacccaagttccaaggcatttcaagatggaaaaacgctcgaaaaaggacaaaa 24047675  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 17862618 - 17862672
Alignment:
Q  27 tttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattca 81  Q
    |||||||||||| || ||||||||| ||||| ||||||||||||| |||| ||||    
T  17862618 tttttgaagacagtacaagttggggaaaattcatcccaagttccaagacatttca 17862672  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 17152357 - 17152406
Alignment:
Q  22 gaaggtttttgaagacaatataagttgggggaaatttatcccaagttcca 71  Q
    ||||||||||||||| |||| ||||||||| ||||| |||||| ||||||    
T  17152357 gaaggtttttgaagataatacaagttggggaaaattcatcccatgttcca 17152406  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 39730656 - 39730724
Alignment:
Q  28 ttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgct 96  Q
    ||||||||||||||  |||||||| ||||| ||||||||||||| | || ||||| | | |||||||||    
T  39730656 ttttgaagacaataagagttggggaaaattcatcccaagttccaaggcatttcaagacggaagaacgct 39730724  T

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