View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11644_high_20 (Length: 311)
Name: NF11644_high_20
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_high_20 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 25326744 - 25326440
Alignment:
| Q |
7 |
tggtctagggtgaagtacttgcataaatacattgagaccatagctaatgaaataaggtacttctactttgattttcaaatataatgaagtgttataaagg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25326744 |
tggtctagggtgaagtacttgcataaatacattgagaccatagctaatgaaataaggtacttctactttgattttcaaatataatgaagtgttataaagg |
25326645 |
T |
|
| Q |
107 |
atgtataatgtataaggtacatcttcgttgctaattattcctttatttttgactcgttgaaaggagtggatcgaatataaaaggttattttgtatggtcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25326644 |
atgtataatgtataaggtacatcttcgttgctaattattccgttatttttgactcgttgaaaggagtggatcgaatataaaaggttattttgtatggtcc |
25326545 |
T |
|
| Q |
207 |
ttcatggatgtgcttgaaatactgagtggatatgaagaaagttttggtctatactacatagatatgaaggatccaaacttgaagagacaacctaagctct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25326544 |
ttcatggatgtgcttgaaatactgagtggatatgaagaaagttttggtctatactacatagatatgaaggatccaaacttgaagagacaacctaagctct |
25326445 |
T |
|
| Q |
307 |
ctgct |
311 |
Q |
| |
|
||||| |
|
|
| T |
25326444 |
ctgct |
25326440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 311
Target Start/End: Complemental strand, 25320781 - 25320633
Alignment:
| Q |
163 |
ttgaaaggagtggatcgaatataaaaggttattttgtatggtccttcatggatgtgcttgaaatactgagtggatatgaagaaagttttggtctatacta |
262 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||||||||||||| ||| |||||| | | ||| || || ||||||||||| ||||| ||| |||| | |
|
|
| T |
25320781 |
ttgaaaggagtggatcaaatgtcaaaggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatgaaataagttatggcttatatca |
25320682 |
T |
|
| Q |
263 |
catagatatgaaggatccaaacttgaagagacaacctaagctctctgct |
311 |
Q |
| |
|
| |||||||||| ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
25320681 |
cgtagatatgaacgatccaagtttgaagagacaacctaaactctctgct |
25320633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 25320992 - 25320909
Alignment:
| Q |
7 |
tggtctagggtgaagtacttgcataaatacattgagaccatagctaatgaaataaggtacttctactttgattttcaaatataa |
90 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| || ||| ||||||| | ||||||||||||| || ||||| ||| ||||| |
|
|
| T |
25320992 |
tggtctagggtgaaatacttgcatgaatacattgggagcatggctaatgcactaaggtacttctaattcgatttccaactataa |
25320909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 301
Target Start/End: Complemental strand, 5216495 - 5216373
Alignment:
| Q |
179 |
gaatataaaaggttattttgtatggtccttcatggatgtgcttgaaatactgagtggatatgaagaaagttttggtctatactacatagatatgaaggat |
278 |
Q |
| |
|
|||||||| |||||| ||||||||| |||| |||||||| |||| |||| |||||||||||| ||||| ||| |||| ||||||||| || | ||| |
|
|
| T |
5216495 |
gaatataagaggttactttgtatgggcctttttggatgtgtttgagttactaggtggatatgaagcaagttatggcttatattacatagatttggaagat |
5216396 |
T |
|
| Q |
279 |
ccaaacttgaagagacaacctaa |
301 |
Q |
| |
|
|||| ||||| ||| |||||||| |
|
|
| T |
5216395 |
ccaaccttgaggaggcaacctaa |
5216373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University