View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11644_high_24 (Length: 281)

Name: NF11644_high_24
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11644_high_24
NF11644_high_24
[»] chr8 (14 HSPs)
chr8 (7-78)||(31159775-31159847)
chr8 (94-147)||(45191212-45191265)
chr8 (98-147)||(5033250-5033299)
chr8 (99-147)||(5033161-5033209)
chr8 (99-147)||(33841681-33841729)
chr8 (104-147)||(33841591-33841634)
chr8 (113-147)||(5667097-5667131)
chr8 (98-143)||(10086846-10086891)
chr8 (98-147)||(35440969-35441018)
chr8 (98-147)||(43844558-43844607)
chr8 (99-147)||(35441059-35441107)
chr8 (113-147)||(5667201-5667235)
chr8 (98-156)||(6296694-6296752)
chr8 (113-147)||(45191127-45191161)
[»] chr2 (11 HSPs)
chr2 (94-147)||(14892345-14892398)
chr2 (97-144)||(14470595-14470642)
chr2 (98-147)||(16514513-16514562)
chr2 (104-145)||(29508692-29508733)
chr2 (98-147)||(38933676-38933725)
chr2 (99-147)||(6217224-6217272)
chr2 (104-147)||(16514424-16514467)
chr2 (98-147)||(32545877-32545926)
chr2 (119-147)||(2894064-2894092)
chr2 (99-147)||(29508781-29508829)
chr2 (104-144)||(45213895-45213935)
[»] chr1 (19 HSPs)
chr1 (94-147)||(32540833-32540886)
chr1 (99-147)||(5995459-5995507)
chr1 (98-147)||(48993917-48993966)
chr1 (99-147)||(48994007-48994055)
chr1 (98-147)||(33219662-33219711)
chr1 (98-147)||(36290496-36290545)
chr1 (94-147)||(49444913-49444966)
chr1 (99-147)||(29179687-29179735)
chr1 (99-147)||(44706874-44706922)
chr1 (99-147)||(46931997-46932045)
chr1 (99-147)||(46932072-46932119)
chr1 (98-144)||(9157313-9157359)
chr1 (98-144)||(21630045-21630091)
chr1 (98-147)||(1091633-1091682)
chr1 (100-141)||(2573236-2573277)
chr1 (98-147)||(28395637-28395686)
chr1 (98-143)||(29179601-29179646)
chr1 (98-147)||(37155046-37155095)
chr1 (99-147)||(5995369-5995417)
[»] chr7 (9 HSPs)
chr7 (98-147)||(11016958-11017007)
chr7 (94-147)||(45231935-45231988)
chr7 (99-147)||(41018318-41018366)
chr7 (99-147)||(11016869-11016917)
chr7 (99-147)||(48000827-48000875)
chr7 (113-147)||(34854799-34854833)
chr7 (98-147)||(4290634-4290683)
chr7 (98-147)||(42628384-42628433)
chr7 (99-147)||(48000694-48000742)
[»] chr5 (13 HSPs)
chr5 (98-147)||(16971233-16971282)
chr5 (98-147)||(2953279-2953328)
chr5 (98-147)||(3899928-3899977)
chr5 (104-144)||(2356366-2356406)
chr5 (99-147)||(19655158-19655206)
chr5 (85-147)||(30117828-30117891)
chr5 (113-147)||(39777051-39777085)
chr5 (99-144)||(291100-291145)
chr5 (98-147)||(291186-291235)
chr5 (98-147)||(2093937-2093986)
chr5 (98-147)||(19655247-19655296)
chr5 (98-147)||(29699456-29699505)
chr5 (99-143)||(30117918-30117962)
[»] chr4 (12 HSPs)
chr4 (98-147)||(47661931-47661980)
chr4 (98-147)||(51265534-51265583)
chr4 (98-147)||(23444269-23444318)
chr4 (98-147)||(42375099-42375148)
chr4 (94-147)||(44380015-44380068)
chr4 (99-147)||(23444359-23444407)
chr4 (99-147)||(30861864-30861912)
chr4 (99-147)||(51265445-51265493)
chr4 (99-145)||(3862636-3862682)
chr4 (99-145)||(3871393-3871439)
chr4 (98-147)||(30709989-30710038)
chr4 (99-147)||(6271702-6271750)
[»] chr3 (10 HSPs)
chr3 (99-147)||(51046163-51046211)
chr3 (98-143)||(51046077-51046122)
chr3 (99-147)||(1801446-1801494)
chr3 (99-147)||(41752964-41753012)
chr3 (98-144)||(30580759-30580805)
chr3 (113-147)||(43139813-43139847)
chr3 (98-147)||(30734491-30734540)
chr3 (98-147)||(45103109-45103158)
chr3 (99-147)||(41753054-41753102)
chr3 (95-147)||(50524788-50524840)
[»] scaffold0016 (1 HSPs)
scaffold0016 (98-147)||(49703-49752)
[»] chr6 (4 HSPs)
chr6 (98-145)||(7384490-7384537)
chr6 (98-144)||(24618604-24618650)
chr6 (113-147)||(24975752-24975786)
chr6 (99-147)||(551255-551303)
[»] scaffold0586 (1 HSPs)
scaffold0586 (98-144)||(7050-7096)


Alignment Details
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 31159775 - 31159847
Alignment:
Q  7 agaagcaaaggtaaccaactaacataccaagacccgttccacatttaggatatgtcatcaa-atatactcaac 78  Q
    |||||| |||||||||||||||||||| |||||||||| || ||||||||||| ||||||| |||||||||||    
T  31159775 agaagccaaggtaaccaactaacatactaagacccgtttcagatttaggatatatcatcaagatatactcaac 31159847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 45191212 - 45191265
Alignment:
Q  94 tgtaacattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  45191212 tgtaacattttgattggtcaatgtcaccaatatcatccaactctatgtcaccca 45191265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 5033250 - 5033299
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  5033250 acattgtgattggtcaatgtcaccaatgtcacccaactctatgtcaccca 5033299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 5033209 - 5033161
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  5033209 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcaccca 5033161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 33841681 - 33841729
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  33841681 cattctgattggtcaatgtcaccaatgtcacccaactctatgtcaccca 33841729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 33841634 - 33841591
Alignment:
Q  104 tgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  33841634 tgattggtcaatgtcaccaatgtcacccaactctatgtcaccca 33841591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 5667131 - 5667097
Alignment:
Q  113 aatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||||||||||||||||||||||||||||||    
T  5667131 aatgtcaccaatgtcatccaactctatgtcaccca 5667097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 10086846 - 10086891
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtca 143  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||    
T  10086846 acattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 35441018 - 35440969
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| |||||||||||||||| ||||||||| ||||||||    
T  35441018 acattgtgattggtcaatgtcaccaatgtcacccaactctaagtcaccca 35440969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 43844558 - 43844607
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||| | ||| |||||||||||||||||||||||||||||||    
T  43844558 acattgtgattgatcaatatcaccaatgtcatccaactctatgtcaccca 43844607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 35441059 - 35441107
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  35441059 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 35441107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 5667201 - 5667235
Alignment:
Q  113 aatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||||||||||||| ||||||||||||||||    
T  5667201 aatgtcaccaatgtcatcaaactctatgtcaccca 5667235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 6296694 - 6296752
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcacccatatcctatc 156  Q
    ||||||| ||||  ||||||||| |||||||||||||||||| ||||||| || |||||    
T  6296694 acattataattgactaatgtcactaatgtcatccaactctatatcacccaaatactatc 6296752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 45191161 - 45191127
Alignment:
Q  113 aatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||||||| ||||||||||||||||||||||    
T  45191161 aatgtcaccaatatcatccaactctatgtcaccca 45191127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 14892345 - 14892398
Alignment:
Q  94 tgtaacattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||||||| |||||| | |||||||||||||||||||||||||||||||||||    
T  14892345 tgtaacattgtgattgatcaatgtcaccaatgtcatccaactctatgtcaccca 14892398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 14470642 - 14470595
Alignment:
Q  97 aacattatgattggttaatgtcaccaatgtcatccaactctatgtcac 144  Q
    |||||| |||||||| |||||||||||||||| |||||||||||||||    
T  14470642 aacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 14470595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 16514513 - 16514562
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| |||||||||||| ||| ||||||||||||||||||    
T  16514513 acattgtgattggtcaatgtcaccaatctcacccaactctatgtcaccca 16514562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 29508733 - 29508692
Alignment:
Q  104 tgattggttaatgtcaccaatgtcatccaactctatgtcacc 145  Q
    |||||||| |||||||||||||||| ||||||||||||||||    
T  29508733 tgattggtcaatgtcaccaatgtcacccaactctatgtcacc 29508692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 38933676 - 38933725
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||||||||  || ||||||||||||| ||||||||||||||||||    
T  38933676 acattatgattggccaacgtcaccaatgtcacccaactctatgtcaccca 38933725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 6217272 - 6217224
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  6217272 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 6217224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 16514467 - 16514424
Alignment:
Q  104 tgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||  |||||||||||||||| ||||||||||||||||||    
T  16514467 tgattggccaatgtcaccaatgtcacccaactctatgtcaccca 16514424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 32545877 - 32545926
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||||||||  ||||||||||||||||   ||||||||||||||||    
T  32545877 acattatgattggccaatgtcaccaatgtcactaaactctatgtcaccca 32545926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 2894064 - 2894092
Alignment:
Q  119 accaatgtcatccaactctatgtcaccca 147  Q
    |||||||||||||||||||||||||||||    
T  2894064 accaatgtcatccaactctatgtcaccca 2894092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 29508781 - 29508829
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||| ||| ||||||||||||||||||    
T  29508781 cattgtgattggccaatgtcaccaatatcacccaactctatgtcaccca 29508829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 45213895 - 45213935
Alignment:
Q  104 tgattggttaatgtcaccaatgtcatccaactctatgtcac 144  Q
    |||||||| ||||||| |||||||| |||||||||||||||    
T  45213895 tgattggtcaatgtcatcaatgtcacccaactctatgtcac 45213935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 32540833 - 32540886
Alignment:
Q  94 tgtaacattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||||||| |||||||| ||||||||||||||||||||| |||||||||||||    
T  32540833 tgtaacattgtgattggtcaatgtcaccaatgtcatccaattctatgtcaccca 32540886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 5995459 - 5995507
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||    
T  5995459 cattgtgattggtcaatgtcaccaatgtcatccaactctatgtcaccca 5995507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 48993966 - 48993917
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  48993966 acattgtgattggtcaatgtcaccaatgtcacccaactctatgtcaccca 48993917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 48994007 - 48994055
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  48994007 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcaccca 48994055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 33219662 - 33219711
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||| | ||||||||||||||||||||||||||||| |||||    
T  33219662 acattgtgattgatcaatgtcaccaatgtcatccaactctatgttaccca 33219711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 36290496 - 36290545
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||||||||||    
T  36290496 acattgtgattggtcaatgccaccaatgtcacccaactctatgtcaccca 36290545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 49444966 - 49444913
Alignment:
Q  94 tgtaacattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||||||| |||||| |  ||||||||||||||| ||||||||||||||||||    
T  49444966 tgtaacattgtgattgatcgatgtcaccaatgtcacccaactctatgtcaccca 49444913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 29179687 - 29179735
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  29179687 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 29179735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 44706874 - 44706922
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  44706874 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 44706922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 46932045 - 46931997
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  46932045 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 46931997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 46932072 - 46932119
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  46932072 cattgtgattggtcaatgtcaccaatgtca-ccaactctatgtcaccca 46932119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 9157359 - 9157313
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcac 144  Q
    ||||| |||||||| ||||| |||||||||| |||||||||||||||    
T  9157359 acattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 9157313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 21630091 - 21630045
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcac 144  Q
    ||||| |||||||| |||||||||||||||| |||||| ||||||||    
T  21630091 acattgtgattggtcaatgtcaccaatgtcacccaactttatgtcac 21630045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 1091633 - 1091682
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| || ||||||||| ||| ||||||||||||||||||    
T  1091633 acattgtgattggtcaaagtcaccaatatcacccaactctatgtcaccca 1091682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 2573236 - 2573277
Alignment:
Q  100 attatgattggttaatgtcaccaatgtcatccaactctatgt 141  Q
    |||||||||||  |||||||||||| ||||||||||||||||    
T  2573236 attatgattggccaatgtcaccaatatcatccaactctatgt 2573277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 28395686 - 28395637
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| ||||||||||||||||  ||||||||||| |||||    
T  28395686 acattgtgattggtcaatgtcaccaatgtcactcaactctatgttaccca 28395637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 29179646 - 29179601
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtca 143  Q
    ||||| |||||||| | |||||||||||||| ||||||||||||||    
T  29179646 acattgtgattggtcagtgtcaccaatgtcacccaactctatgtca 29179601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 37155095 - 37155046
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||  |||||||||||||||| | ||||||||||||||||    
T  37155095 acattgtgattggccaatgtcaccaatgtcaccaaactctatgtcaccca 37155046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 5995417 - 5995369
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  ||||| |||||||||||| ||||||||||||||||    
T  5995417 cattgtgattggccaatgttaccaatgtcatcaaactctatgtcaccca 5995369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 11016958 - 11017007
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  11016958 acattgtgattggtcaatgtcaccaatgtcacccaactctatgtcaccca 11017007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 45231935 - 45231988
Alignment:
Q  94 tgtaacattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||||||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  45231935 tgtaacattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 45231988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 41018318 - 41018366
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  41018318 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcaccca 41018366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 11016917 - 11016869
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  11016917 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 11016869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 48000827 - 48000875
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||| |||||||||||||||| |||||||||||| |||||    
T  48000827 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtgaccca 48000875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 34854799 - 34854833
Alignment:
Q  113 aatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||||||||||| ||||||||||||||||||    
T  34854799 aatgtcaccaatgtcacccaactctatgtcaccca 34854833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 4290634 - 4290683
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||  |||||||||||||||| |||||| |||||||||||    
T  4290634 acattgtgattggccaatgtcaccaatgtcacccaactgtatgtcaccca 4290683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 42628384 - 42628433
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||  ||| |||||||||||| ||||||||||||||||||    
T  42628384 acattgtgattggccaatatcaccaatgtcacccaactctatgtcaccca 42628433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 48000742 - 48000694
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||| | |||||||||||||||| ||||||| ||||||||||    
T  48000742 cattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcaccca 48000694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 16971233 - 16971282
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  16971233 acattgtgattggtcaatgtcaccaatgtcacccaactctatgtcaccca 16971282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 2953279 - 2953328
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  2953279 acattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 2953328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 3899928 - 3899977
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| |||||||||||||||| ||||||||| ||||||||    
T  3899928 acattgtgattggtcaatgtcaccaatgtcacccaactctaagtcaccca 3899977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 2356366 - 2356406
Alignment:
Q  104 tgattggttaatgtcaccaatgtcatccaactctatgtcac 144  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  2356366 tgattggccaatgtcaccaatgtcatccaactctatgtcac 2356406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 19655206 - 19655158
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  19655206 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 19655158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 30117891 - 30117828
Alignment:
Q  85 tcataaacat-gtaacattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||||| || ||||| |||||||| ||| |||||||||||| |||||||||| |||||||    
T  30117891 tcataaacattgtgacattgtgattggtcaatatcaccaatgtcacccaactctatatcaccca 30117828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 39777085 - 39777051
Alignment:
Q  113 aatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||||||||||| ||||||||||||||||||    
T  39777085 aatgtcaccaatgtcacccaactctatgtcaccca 39777051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 291145 - 291100
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcac 144  Q
    |||| |||||||  |||||||||||||||| |||||||||||||||    
T  291145 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 291100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 291186 - 291235
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||| | |||||||||||||||| |||||||||| |||||||    
T  291186 acattgtgattgatcaatgtcaccaatgtcacccaactctatatcaccca 291235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 2093986 - 2093937
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||| | |||||||||||| ||| ||||||||||||||||||    
T  2093986 acattgtgattgatcaatgtcaccaatatcacccaactctatgtcaccca 2093937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 19655247 - 19655296
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||  ||||||||||||||||  |||||||||||||||||    
T  19655247 acattgtgattggacaatgtcaccaatgtcactcaactctatgtcaccca 19655296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 29699456 - 29699505
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||  |||||||||||| ||| ||||||||||||||||||    
T  29699456 acattgtgattggccaatgtcaccaatatcacccaactctatgtcaccca 29699505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 30117918 - 30117962
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtca 143  Q
    |||||||||||   ||| |||||||||||||||||||||||||||    
T  30117918 cattatgattgaccaatatcaccaatgtcatccaactctatgtca 30117962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 47661931 - 47661980
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  47661931 acattgtgattggtcaatgtcaccaatgtcacccaactctatgtcaccca 47661980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 51265534 - 51265583
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  51265534 acattatgattggtcaatgtcaccaatgtcacccaactctaagtcaccca 51265583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 23444318 - 23444269
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| |||||||||||||||| |||||||||||| |||||    
T  23444318 acattgtgattggtcaatgtcaccaatgtcacccaactctatgttaccca 23444269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 42375099 - 42375148
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||| | |||||||||||||||| ||||||||||||||||||    
T  42375099 acattgtgattgatcaatgtcaccaatgtcacccaactctatgtcaccca 42375148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 44380015 - 44380068
Alignment:
Q  94 tgtaacattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||||||| |||||||| ||| ||||||||||||  |||||||||||||||||    
T  44380015 tgtaacattgtgattggtcaatatcaccaatgtcactcaactctatgtcaccca 44380068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 23444359 - 23444407
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  23444359 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 23444407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 30861864 - 30861912
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||| ||||||||||||||||||||||    
T  30861864 cattgtgattggccaatgtcaccaatatcatccaactctatgtcaccca 30861912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 51265493 - 51265445
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  51265493 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 51265445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 3862636 - 3862682
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcacc 145  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||    
T  3862636 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacc 3862682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 3871393 - 3871439
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcacc 145  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||    
T  3871393 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacc 3871439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 30709989 - 30710038
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||  |||||||||||||||| | ||||||||||||||||    
T  30709989 acattgtgattggccaatgtcaccaatgtcacctaactctatgtcaccca 30710038  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 6271750 - 6271702
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||| ||| ||||||||||||||||||    
T  6271750 cattgtgattggccaatgtcaccaatatcacccaactctatgtcaccca 6271702  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 51046163 - 51046211
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||||||||||||||||||||||    
T  51046163 cattgtgattggccaatgtcaccaatgtcatccaactctatgtcaccca 51046211  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 51046122 - 51046077
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtca 143  Q
    |||||||||||| | |||||||||||| ||||||||||||||||||    
T  51046122 acattatgattgatcaatgtcaccaatatcatccaactctatgtca 51046077  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 1801494 - 1801446
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  1801494 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 1801446  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 41753012 - 41752964
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  41753012 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccca 41752964  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 30580805 - 30580759
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcac 144  Q
    |||||||||||||| ||| |||||||||||| |||| ||||||||||    
T  30580805 acattatgattggtcaatatcaccaatgtcacccaattctatgtcac 30580759  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 43139813 - 43139847
Alignment:
Q  113 aatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||||||||||| ||||||||||||||||||    
T  43139813 aatgtcaccaatgtcacccaactctatgtcaccca 43139847  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 30734491 - 30734540
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||  |||||||||||||||| | ||||||||||||||||    
T  30734491 acattgtgattggccaatgtcaccaatgtcacctaactctatgtcaccca 30734540  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 45103158 - 45103109
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||| | ||| |||||||||||| ||||||||||||||||||    
T  45103158 acattgtgattgatcaatatcaccaatgtcacccaactctatgtcaccca 45103109  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 41753054 - 41753102
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  ||||||||||||||||  |||||||||||||||||    
T  41753054 cattgtgattggccaatgtcaccaatgtcactcaactctatgtcaccca 41753102  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 50524788 - 50524840
Alignment:
Q  95 gtaacattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||| ||||||  |||| ||||||||||||  |||||||||||||||||    
T  50524788 gtaacattgtgattgactaatatcaccaatgtcactcaactctatgtcaccca 50524840  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 49752 - 49703
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||||||    
T  49752 acattgtgattggtcaatgtcatcaatgtcacccaactctatgtcaccca 49703  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 7384537 - 7384490
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcacc 145  Q
    ||||| |||||||| |||||||| |||||||||||||||||| |||||    
T  7384537 acattgtgattggtcaatgtcactaatgtcatccaactctatatcacc 7384490  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 24618650 - 24618604
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcac 144  Q
    ||||| |||||| | |||||||||||||||| |||||||||||||||    
T  24618650 acattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 24618604  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 24975786 - 24975752
Alignment:
Q  113 aatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||||||||||||||| ||||||||||||||||||    
T  24975786 aatgtcaccaatgtcagccaactctatgtcaccca 24975752  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 551255 - 551303
Alignment:
Q  99 cattatgattggttaatgtcaccaatgtcatccaactctatgtcaccca 147  Q
    |||| |||||||  |||||||||||| |||||||| |||||||||||||    
T  551255 cattgtgattggccaatgtcaccaatatcatccaattctatgtcaccca 551303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 7096 - 7050
Alignment:
Q  98 acattatgattggttaatgtcaccaatgtcatccaactctatgtcac 144  Q
    ||||| ||||||| |||| |||||||||||| |||||||||||||||    
T  7096 acattgtgattggctaatatcaccaatgtcacccaactctatgtcac 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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