View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11644_high_29 (Length: 222)

Name: NF11644_high_29
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11644_high_29
NF11644_high_29
[»] chr8 (16 HSPs)
chr8 (15-205)||(9937984-9938174)
chr8 (29-87)||(18897162-18897220)
chr8 (29-85)||(16852338-16852394)
chr8 (29-80)||(2203495-2203546)
chr8 (29-80)||(3624583-3624634)
chr8 (30-84)||(28560606-28560660)
chr8 (30-80)||(28566108-28566158)
chr8 (30-80)||(28573731-28573781)
chr8 (29-85)||(19703509-19703565)
chr8 (29-80)||(12988431-12988482)
chr8 (29-80)||(20994480-20994531)
chr8 (29-80)||(26688868-26688919)
chr8 (29-85)||(5264542-5264598)
chr8 (44-80)||(18540301-18540337)
chr8 (32-80)||(22268958-22269006)
chr8 (44-80)||(23874419-23874455)
[»] chr2 (11 HSPs)
chr2 (29-86)||(29503268-29503325)
chr2 (29-84)||(33962806-33962861)
chr2 (30-86)||(42602551-42602607)
chr2 (29-80)||(16918600-16918651)
chr2 (29-80)||(42327417-42327468)
chr2 (29-85)||(3697421-3697477)
chr2 (29-85)||(19322766-19322822)
chr2 (29-80)||(42922417-42922468)
chr2 (29-80)||(43964010-43964061)
chr2 (29-85)||(1729814-1729870)
chr2 (29-77)||(12982518-12982566)
[»] chr7 (15 HSPs)
chr7 (29-83)||(20952171-20952225)
chr7 (29-80)||(25021357-25021408)
chr7 (29-76)||(25956314-25956361)
chr7 (29-80)||(26459432-26459483)
chr7 (33-79)||(44146577-44146623)
chr7 (29-83)||(45976945-45976999)
chr7 (29-89)||(17041034-17041094)
chr7 (32-80)||(42836026-42836074)
chr7 (32-80)||(45559203-45559251)
chr7 (29-80)||(43215187-43215238)
chr7 (30-80)||(33869468-33869518)
chr7 (29-81)||(15905695-15905747)
chr7 (44-80)||(39499756-39499792)
chr7 (44-80)||(39631847-39631883)
chr7 (44-84)||(43663132-43663172)
[»] chr6 (5 HSPs)
chr6 (29-80)||(12188325-12188376)
chr6 (32-79)||(33724700-33724747)
chr6 (32-80)||(22696-22744)
chr6 (29-61)||(13113983-13114015)
chr6 (49-85)||(15497079-15497115)
[»] chr5 (7 HSPs)
chr5 (29-80)||(21549159-21549210)
chr5 (29-86)||(30883220-30883277)
chr5 (29-80)||(16457813-16457864)
chr5 (29-80)||(22737085-22737136)
chr5 (29-79)||(16436622-16436671)
chr5 (46-80)||(26078090-26078124)
chr5 (47-83)||(14804710-14804746)
[»] chr4 (5 HSPs)
chr4 (29-80)||(37109373-37109424)
chr4 (29-85)||(21344815-21344871)
chr4 (29-80)||(29195098-29195149)
chr4 (33-61)||(26895139-26895167)
chr4 (29-81)||(39030135-39030187)
[»] chr1 (15 HSPs)
chr1 (29-80)||(9165217-9165268)
chr1 (29-80)||(15581163-15581214)
chr1 (29-72)||(31605870-31605913)
chr1 (29-80)||(31794286-31794337)
chr1 (29-80)||(36371473-36371524)
chr1 (29-80)||(44486179-44486230)
chr1 (29-80)||(45235401-45235452)
chr1 (29-87)||(4566544-4566602)
chr1 (29-79)||(4824975-4825025)
chr1 (29-86)||(40257396-40257453)
chr1 (47-83)||(2379425-2379461)
chr1 (29-81)||(17410233-17410285)
chr1 (29-57)||(22188827-22188855)
chr1 (32-80)||(39012294-39012342)
chr1 (29-80)||(50901584-50901636)
[»] chr3 (4 HSPs)
chr3 (33-83)||(40372142-40372192)
chr3 (33-80)||(11092195-11092242)
chr3 (29-84)||(31295454-31295509)
chr3 (29-80)||(42799769-42799820)
[»] scaffold0221 (1 HSPs)
scaffold0221 (29-80)||(2931-2982)
[»] scaffold0211 (1 HSPs)
scaffold0211 (29-80)||(24056-24107)
[»] scaffold0002 (2 HSPs)
scaffold0002 (29-80)||(94993-95044)
scaffold0002 (47-80)||(459886-459919)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 9937984 - 9938174
Alignment:
Q  15 atgaaacaggagatgaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggatttataatcggaatatttaaaaactcaaagtcc 114  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9937984 atgaaacatgagacgaggagcacacttcaaggtcccaaaccaataccattagaccaacccaagtggatttataatcggaatatttaaaaactcaaagtcc 9938083  T
Q  115 atgtgttttgacattaaattattgtaatttccgtttcaaaactttttgaattttaaaatagtccaaacaaaagtaacatgtttcatattat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9938084 atgtgttttgacattaaattattgtaatttccgtttcaaaactttttgaattttaaaatagtccaaacaaaagtaacatgtttcatattat 9938174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 18897220 - 18897162
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggatttata 87  Q
    ||||||||||||  ||||||||||||||| |||| ||||||||||||||||| ||||||    
T  18897220 gaggagcacactctaaggtcccaaaccaacaccactaggccaacccaagtgggtttata 18897162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 16852394 - 16852338
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggattta 85  Q
    |||||||||||| | ||||||||| ||||||||| ||||||||||||||||| ||||    
T  16852394 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttta 16852338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 2203546 - 2203495
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | ||||||||| ||||||||| |||||||||||||||||    
T  2203546 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 2203495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 3624634 - 3624583
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | ||||||||| ||||||||| |||||||||||||||||    
T  3624634 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 3624583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 28560660 - 28560606
Alignment:
Q  30 aggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggattt 84  Q
    |||||||||||  |||||||||||||||||||| |||  ||||||||||||||||    
T  28560660 aggagcacactctaaggtcccaaaccaataccactagttcaacccaagtggattt 28560606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 28566158 - 28566108
Alignment:
Q  30 aggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||  |||||||||||||||||||| |||| ||||||||||||    
T  28566158 aggagcacactctaaggtcccaaaccaataccactaggtcaacccaagtgg 28566108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 28573781 - 28573731
Alignment:
Q  30 aggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||  |||||||||||||||||||| |||| ||||||||||||    
T  28573781 aggagcacactctaaggtcccaaaccaataccactaggtcaacccaagtgg 28573731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 19703509 - 19703565
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggattta 85  Q
    ||||||||||||   ||||||||| ||||||||| ||||||||||||||||| ||||    
T  19703509 gaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggttta 19703565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 12988482 - 12988431
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||||| |||| |||| ||||||||| |||||||| ||||||||    
T  12988482 gaggagcacacttccaggttccaagccaataccactaggccaatccaagtgg 12988431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 20994480 - 20994531
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | |||||||||  |||||||| |||||||||||||||||    
T  20994480 gaggagcacactcccaggtcccaagtcaataccactaggccaacccaagtgg 20994531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 26688919 - 26688868
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| ||||||||||| |||| ||||  ||||||||||||||||    
T  26688919 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgg 26688868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 5264598 - 5264542
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggattta 85  Q
    |||||||||| | | |||| |||| ||||||||| ||||||||||||||||| ||||    
T  5264598 gaggagcacattcccaggttccaagccaataccactaggccaacccaagtgggttta 5264542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 18540337 - 18540301
Alignment:
Q  44 aggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  18540337 aggtcccaagccaataccactaggccaacccaagtgg 18540301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 22268958 - 22269006
Alignment:
Q  32 gagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||| ||||||||||| |||| ||||  ||||||||||||||||    
T  22268958 gagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgg 22269006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 23874419 - 23874455
Alignment:
Q  44 aggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  23874419 aggtcccaagccaataccactaggccaacccaagtgg 23874455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 29503325 - 29503268
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggatttat 86  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||    
T  29503325 gaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggtttat 29503268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 33962806 - 33962861
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggattt 84  Q
    |||||||||||| | || ||||||||||||| ||||||||||||||||||||||||    
T  33962806 gaggagcacactcccagttcccaaaccaatatcattaggccaacccaagtggattt 33962861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 42602607 - 42602551
Alignment:
Q  30 aggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggatttat 86  Q
    ||||||||||| | ||||||||| ||||||||| ||||||||||||||||| |||||    
T  42602607 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtttat 42602551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 16918600 - 16918651
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | || |||||||||||||||| |||||||||||||||||    
T  16918600 gaggagcacactcccagatcccaaaccaataccactaggccaacccaagtgg 16918651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 42327417 - 42327468
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | ||||||||| ||||||||| |||||||||||||||||    
T  42327417 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 42327468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 3697421 - 3697477
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggattta 85  Q
    ||||||||| || ||||||||||| |||||||||| || ||||||||||||| ||||    
T  3697421 gaggagcactctccaaggtcccaagccaataccatcagaccaacccaagtgggttta 3697477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 19322822 - 19322766
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggattta 85  Q
    |||||||||||| | ||||||||||||||||||| |||  |||||||||||| ||||    
T  19322822 gaggagcacactcccaggtcccaaaccaataccactagatcaacccaagtgggttta 19322766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 42922468 - 42922417
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | |||| |||| ||||||||| |||||||||||||||||    
T  42922468 gaggagcacactcccaggttccaagccaataccactaggccaacccaagtgg 42922417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 43964010 - 43964061
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| |||||||||||||||| || | ||| |||||||||||||    
T  43964010 gaggagcacactccaaggtcccaaaccaacactactagaccaacccaagtgg 43964061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 1729870 - 1729814
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggattta 85  Q
    |||||||||||| | | ||||||| ||||||||| ||| ||||||||||||| ||||    
T  1729870 gaggagcacactcccaagtcccaagccaataccactagcccaacccaagtgggttta 1729814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 12982518 - 12982566
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaag 77  Q
    |||||||||||||  ||||| ||| ||||||||| ||||||||||||||    
T  12982518 gaggagcacacttgcaggtctcaatccaataccactaggccaacccaag 12982566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 20952171 - 20952225
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggatt 83  Q
    |||||||||||| | |||||||||||||||||||| ||| |||||||||||||||    
T  20952171 gaggagcacactcccaggtcccaaaccaataccatcaggtcaacccaagtggatt 20952225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 25021357 - 25021408
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | ||||||||| ||||||||| |||||||||||||||||    
T  25021357 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 25021408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 25956314 - 25956361
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaa 76  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  25956314 gaggagcacactccaaggtcccaagccaataccactaggccaacccaa 25956361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 26459432 - 26459483
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | ||||||||| ||||||||| |||||||||||||||||    
T  26459432 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 26459483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 44146577 - 44146623
Alignment:
Q  33 agcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 79  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||    
T  44146577 agcacactccaaggtcccaaaccaacaccactaggccaacccaagtg 44146623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 45976945 - 45976999
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggatt 83  Q
    |||||||||||| | ||||| ||| ||||||||| ||||||||||||||||||||    
T  45976945 gaggagcacactcccaggtcacaagccaataccactaggccaacccaagtggatt 45976999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 17041034 - 17041094
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggatttataat 89  Q
    |||||||||||||| || |||||| ||||| ||| ||| ||||||||||||| ||||||||    
T  17041034 gaggagcacacttccagatcccaagccaatgccactagaccaacccaagtgggtttataat 17041094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 42836026 - 42836074
Alignment:
Q  32 gagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||| | ||||||||| ||||||||| |||||||||||||||||    
T  42836026 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 42836074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 45559251 - 45559203
Alignment:
Q  32 gagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||| |||||| |||| ||||||||| |||||||||||||||||    
T  45559251 gagcacactccaaggttccaagccaataccactaggccaacccaagtgg 45559203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 43215238 - 43215187
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | ||||||||| ||||||||| ||| |||||||||||||    
T  43215238 gaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgg 43215187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 33869468 - 33869518
Alignment:
Q  30 aggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||||||| ||||| ||| ||||||| | |||||||||||||||||    
T  33869468 aggagcacacttccaggtctcaagccaatactactaggccaacccaagtgg 33869518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 15905695 - 15905747
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgga 81  Q
    |||||||||||| | ||||||||| ||||||||   |||||||||||||||||    
T  15905695 gaggagcacactcccaggtcccaagccaataccgccaggccaacccaagtgga 15905747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 39499756 - 39499792
Alignment:
Q  44 aggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  39499756 aggtcccaagccaataccactaggccaacccaagtgg 39499792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 39631883 - 39631847
Alignment:
Q  44 aggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  39631883 aggtcccaagccaataccactaggccaacccaagtgg 39631847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 43663132 - 43663172
Alignment:
Q  44 aggtcccaaaccaataccattaggccaacccaagtggattt 84  Q
    |||||||||  ||||||||| ||||||||||||||||||||    
T  43663132 aggtcccaagtcaataccatcaggccaacccaagtggattt 43663172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 12188325 - 12188376
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | ||||||||| ||||||||| |||||||||||||||||    
T  12188325 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 12188376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 33724700 - 33724747
Alignment:
Q  32 gagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 79  Q
    |||||||||  ||||||||||||||| |||||||||||| ||||||||    
T  33724700 gagcacactctaaggtcccaaaccaacaccattaggccatcccaagtg 33724747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 22696 - 22744
Alignment:
Q  32 gagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||| ||||||||||| |||| |||| ||| |||||||||||||    
T  22696 gagcacactccaaggtcccaagccaaaaccactagcccaacccaagtgg 22744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 13113983 - 13114015
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaatacc 61  Q
    |||||||||||||||||||||||| ||||||||    
T  13113983 gaggagcacacttcaaggtcccaagccaatacc 13114015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 15497079 - 15497115
Alignment:
Q  49 ccaaaccaataccattaggccaacccaagtggattta 85  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  15497079 ccaaaccaatatcattaggccaacccaagtgggttta 15497115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 21549159 - 21549210
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | ||||||||| ||||||||| |||||||||||||||||    
T  21549159 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 21549210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 30883220 - 30883277
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggatttat 86  Q
    |||||||||||| | ||||||||| ||||||||| ||| ||||||||||||| |||||    
T  30883220 gaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggtttat 30883277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 16457864 - 16457813
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| ||||||||||| |||||||||  ||||||||| ||||||    
T  16457864 gaggagcacactccaaggtcccaagccaataccaccaggccaacctaagtgg 16457813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 22737136 - 22737085
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||||| | ||||||| ||||||||| ||| |||||||||||||    
T  22737136 gaggagcacacttccaagtcccaagccaataccactagaccaacccaagtgg 22737085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 16436671 - 16436622
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 79  Q
    |||||||||||| |||| |||||| ||||||||| ||||||||||||||||    
T  16436671 gaggagcacactccaag-tcccaagccaataccactaggccaacccaagtg 16436622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 26078090 - 26078124
Alignment:
Q  46 gtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||||||||||| |||||||||||||||||    
T  26078090 gtcccaaaccaataccactaggccaacccaagtgg 26078124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 14804710 - 14804746
Alignment:
Q  47 tcccaaaccaataccattaggccaacccaagtggatt 83  Q
    ||||||||||||| || ||||||||||||||||||||    
T  14804710 tcccaaaccaataacactaggccaacccaagtggatt 14804746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 37109373 - 37109424
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | ||||||||| ||||||||| |||||||||||||||||    
T  37109373 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 37109424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 21344871 - 21344815
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggattta 85  Q
    |||||||||||| ||||||||||| |||| | ||| |||||||||||||||| ||||    
T  21344871 gaggagcacactccaaggtcccaagccaacatcatcaggccaacccaagtgggttta 21344815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 29195149 - 29195098
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| ||||||||||| |||| ||||  ||||||||||||||||    
T  29195149 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgg 29195098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 26895167 - 26895139
Alignment:
Q  33 agcacacttcaaggtcccaaaccaatacc 61  Q
    |||||||||||||||||||||||||||||    
T  26895167 agcacacttcaaggtcccaaaccaatacc 26895139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 39030135 - 39030187
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgga 81  Q
    |||||||||||| ||||||||||| |||| ||||  |||||||||| ||||||    
T  39030135 gaggagcacactccaaggtcccaagccaacaccaccaggccaaccccagtgga 39030187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 9165217 - 9165268
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | ||||||||| ||||||||| |||||||||||||||||    
T  9165217 gaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 9165268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 15581163 - 15581214
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| ||||||||||| |||| ||||  ||||||||||||||||    
T  15581163 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgg 15581214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 31605870 - 31605913
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaac 72  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||    
T  31605870 gaggagcacacttcaaggtcccaagccaacaccatcaggccaac 31605913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 31794286 - 31794337
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | | ||||||| ||||||||| |||||||||||||||||    
T  31794286 gaggagcacactcccaagtcccaagccaataccactaggccaacccaagtgg 31794337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 36371524 - 36371473
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | |||| |||| ||||||||| |||||||||||||||||    
T  36371524 gaggagcacactcccaggttccaagccaataccactaggccaacccaagtgg 36371473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 44486179 - 44486230
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| |||||| ||||||||| |||| |||||||| ||||||||    
T  44486179 gaggagcacactccaaggttccaaaccaacaccactaggccaatccaagtgg 44486230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 45235401 - 45235452
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | | |||||||||||||||||| || |||||||||||||    
T  45235401 gaggagcacactcccaagtcccaaaccaataccatcagaccaacccaagtgg 45235452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 4566602 - 4566544
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggatttata 87  Q
    |||||||||||| | |||| |||| |||||| || ||||||||||||||||| ||||||    
T  4566602 gaggagcacactcccaggttccaagccaatatcactaggccaacccaagtgggtttata 4566544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 4825025 - 4824975
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtg 79  Q
    |||||||||||| ||||||||||| |||| ||||| || ||||||||||||    
T  4825025 gaggagcacactccaaggtcccaagccaacaccatcagaccaacccaagtg 4824975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 40257453 - 40257396
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggatttat 86  Q
    |||||||||||| | ||||| ||| |||||||||  |||||||||||||||| |||||    
T  40257453 gaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggtttat 40257396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 2379461 - 2379425
Alignment:
Q  47 tcccaaaccaataccattaggccaacccaagtggatt 83  Q
    |||||||||||||||| |||| |||||||||||||||    
T  2379461 tcccaaaccaataccactaggtcaacccaagtggatt 2379425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 17410285 - 17410233
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgga 81  Q
    ||||| |||||| | || |||||||||||||||| ||||||||||||| ||||    
T  17410285 gaggaccacactcccagatcccaaaccaataccactaggccaacccaattgga 17410233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 22188827 - 22188855
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaa 57  Q
    |||||||||||||||||||||||||||||    
T  22188827 gaggagcacacttcaaggtcccaaaccaa 22188855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 39012342 - 39012294
Alignment:
Q  32 gagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||| ||||||||||| |||| |||| |||||||||| ||||||    
T  39012342 gagcacactccaaggtcccaagccaacaccactaggccaaccaaagtgg 39012294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 50901636 - 50901584
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaat-accattaggccaacccaagtgg 80  Q
    |||||||||||| | ||||||||| ||||| |||| |||||||||||||||||    
T  50901636 gaggagcacactaccaggtcccaagccaattaccactaggccaacccaagtgg 50901584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 40372192 - 40372142
Alignment:
Q  33 agcacacttcaaggtcccaaaccaataccattaggccaacccaagtggatt 83  Q
    ||||| ||||||||||||||||||||||||| || |||||| |||||||||    
T  40372192 agcacccttcaaggtcccaaaccaataccatcagaccaacctaagtggatt 40372142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 11092195 - 11092242
Alignment:
Q  33 agcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||| ||||||||||| |||| |||| |||||||||||||||||    
T  11092195 agcacactacaaggtcccaagccaacaccactaggccaacccaagtgg 11092242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 31295509 - 31295454
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtggattt 84  Q
    |||||||||||||| || ||||||| ||||||||| |  |||||||||||||||||    
T  31295509 gaggagcacacttctagatcccaaatcaataccatcaaaccaacccaagtggattt 31295454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 42799769 - 42799820
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| ||||||||||| |||| ||||  ||||||||||||||||    
T  42799769 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgg 42799820  T

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Target: scaffold0221 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 2931 - 2982
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||| ||||||||||||||||||||||| ||||  | ||||||||||||||    
T  2931 gaggatcacacttcaaggtcccaaaccaaaaccaccaagccaacccaagtgg 2982  T

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Target: scaffold0211 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 24107 - 24056
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | | |||||||  ||||||||||||||||||||||||||    
T  24107 gaggagcacactcctaagtcccaagtcaataccattaggccaacccaagtgg 24056  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 94993 - 95044
Alignment:
Q  29 gaggagcacacttcaaggtcccaaaccaataccattaggccaacccaagtgg 80  Q
    |||||||||||| | |||| |||| ||||||||| |||||||||||||||||    
T  94993 gaggagcacactcccaggttccaagccaataccactaggccaacccaagtgg 95044  T

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Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 459919 - 459886
Alignment:
Q  47 tcccaaaccaataccattaggccaacccaagtgg 80  Q
    ||||||||||||||||||||||||||| ||||||    
T  459919 tcccaaaccaataccattaggccaaccaaagtgg 459886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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