View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_high_5 (Length: 513)
Name: NF11644_high_5
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 503
Target Start/End: Complemental strand, 6487511 - 6487025
Alignment:
| Q |
17 |
atatatcaagtcatttgaaacaagtcaaatcatcacttttgaaaatagggatcaaaactacactatctattgctatatttcacttgcattgcatttttgg |
116 |
Q |
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| T |
6487511 |
atatatcaagtcatttgaaacaagtcaaatcatcacttttgaaaatagggatcaaaactacactatctattgctatctttcacttgcattgcatttttgg |
6487412 |
T |
|
| Q |
117 |
ggtaaattactagccgtatggttaaaatgctaattaataatttataccttaaaatagcactcaaaggcaacaaattaagaccacacgaagtgtaataaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6487411 |
ggtaaattactagccgtatggttaaaatgctaattaataatttataccttaaaatagcactcaaaggcaacaaattaagaccacacgaagtgtaataaca |
6487312 |
T |
|
| Q |
217 |
agagccaattaatttttgtaccaattgaagcaatcctatattttaccaaggaaaaccgaatatctaggacccaaaattataattttgtaagaacctctta |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6487311 |
agagccaattaattcttgtaccaattgaagcaatcctatattttaccaaggaaaaccgaatatctaggacccaaaattataattttgtaagaacctctta |
6487212 |
T |
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| Q |
317 |
aagaaatggatttgttctacgtgtccatacatgatttgtttactattcatttccacaccatatttattatatttatacatttttatatgctatctctctt |
416 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6487211 |
aagaaatggatttgttttacgtgtccatacatgatttgtttactattcatttccacaccatatttattatatttatacatttttatatgctctctctctt |
6487112 |
T |
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| Q |
417 |
tcctctctcccgctcaacttaacagcttcctttcccatttctttagcccaaccaatcaatcaaagtcttcatttagttttccttctt |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6487111 |
tcctctctcccgctcaacttaacagcttcctttcccatttctttagcccaaccaatcaatcaaagtcttcatttagttttccttctt |
6487025 |
T |
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