View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11644_high_6 (Length: 474)
Name: NF11644_high_6
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 49352549 - 49353006
Alignment:
| Q |
1 |
atttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352549 |
atttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttct |
49352648 |
T |
|
| Q |
101 |
ctctctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggcacttggttttcttccgccaccaagtaggggtaaaaccttgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352649 |
ctctctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggcacttggttttcttccgccaccaagtaggggtaaaaccttgga |
49352748 |
T |
|
| Q |
201 |
agatattaacattcagtttgtgtacgagcttcagtctagatcatttcttcaaaattttagagactttggtggtggtttttgttcatttgaattgcatgat |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
49352749 |
agatatgaacattcagtttgtgtacgagcttcagtctagatcatttcttcaaaattttagagactttggtggtggtttttgtggttttaaattgcatgat |
49352848 |
T |
|
| Q |
301 |
ttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtccttcatctgtcatttc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49352849 |
ttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatactcgagaatgtccttcatctgtcatttc |
49352948 |
T |
|
| Q |
401 |
ttaaaaatgatttgcttggcctaacgccggttcctactggcctgagaaccttgatatt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352949 |
ttaaaaatgatttgcttggcctaacgccggttcctactggcctgagaaccttgatatt |
49353006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 49341173 - 49341620
Alignment:
| Q |
1 |
atttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttct |
100 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49341173 |
atttgggatttaccacaaaaagatgacgacattttgtctgctatcaaa--aagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttct |
49341270 |
T |
|
| Q |
101 |
ctctctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggcacttggttttcttccgccaccaagtaggggtaaaaccttgga |
200 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
49341271 |
ctctctttgaaaagtactttccatttattaattttgatgttagtgtgctatgggtggcatttggttttcttccaccaccaaacatgggtaaaaccttgga |
49341370 |
T |
|
| Q |
201 |
agatattaacattcagtttgtgtacgagcttcagtctagatcatttcttcaaaattttagagactttggtggtggtttttgttcatttgaattgcatgat |
300 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
49341371 |
agatattagcattcagtttctgtacgaccttcagtctagatcatttattcaagattttgtagactttggtggtggtttttgtggatttaaattgcatgat |
49341470 |
T |
|
| Q |
301 |
ttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtccttcatctgtcatttc |
400 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
49341471 |
ttagtgcatgatctctcattgtatgttgcaagagatgagtttcaattgttgaaatttcatgatgaaaatatattcgagaatgtccttcatttgtcattta |
49341570 |
T |
|
| Q |
401 |
ttaaaaatgatttgcttggcctaacgccggttcctactggcctgagaacc |
450 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| || ||||||||| |
|
|
| T |
49341571 |
ttaaaaatgatttgcttggcctaacacgagttcctacaggtctgagaacc |
49341620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 132 - 449
Target Start/End: Original strand, 19030639 - 19030956
Alignment:
| Q |
132 |
ttttcatgttagtgtgctatgggtggcacttggttttcttccgccaccaagtaggggtaaaaccttggaagatattaacattcagtttgtgtacgagctt |
231 |
Q |
| |
|
|||||||||| |||| |||||| |||||||||||||||||| | ||||| || ||||||||||||| |||||||| |||||||||| || | |||||| |
|
|
| T |
19030639 |
ttttcatgttcatgtgttatgggaggcacttggttttcttccacaaccaaacagaggtaaaaccttggtagatattagcattcagtttctgcatgagctt |
19030738 |
T |
|
| Q |
232 |
cagtctagatcatttcttcaaaattttagagactttggtggtggtttttgttcatttgaattgcatgatttggtgcatgatctttcattgtatgttgcaa |
331 |
Q |
| |
|
||| |||||||| |||||| ||||| |||| |||||| || || ||||| ||| | ||||||||||| ||||| |||||| ||||||||||||||| |
|
|
| T |
19030739 |
tggtcaagatcattccttcaagattttgaagacattggtgatgtttgttgttactttaacttgcatgatttagtgcacgatcttgcattgtatgttgcaa |
19030838 |
T |
|
| Q |
332 |
gagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtccttcatctgtcatttcttaaaaatgatttgcttggcctaacgccggt |
431 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| | |||||| | ||||||||||||||| || ||||||||||||||||| ||| || | |
|
|
| T |
19030839 |
aagatgagtttcagttgttgaaatttcataatgaaaatatatcagagaatattcttcatctgtcatttattgaaaatgatttgcttggcaaaacaccaat |
19030938 |
T |
|
| Q |
432 |
tcctactggcctgagaac |
449 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
19030939 |
tcctactggtctaagaac |
19030956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 32783720 - 32783272
Alignment:
| Q |
1 |
atttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
32783720 |
atttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttacgatcagttaccttcttatttaaaacgatgttttacttgcttct |
32783621 |
T |
|
| Q |
101 |
ctctctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggcacttggttttcttccgccaccaagtaggggtaaaaccttgga |
200 |
Q |
| |
|
| |||||| ||||| ||||| ||| ||||| | ||||||| |||| |||| || |||||| |||||| |||||||| ||||||||||||||||| |
|
|
| T |
32783620 |
ccctctttcaaaaggactttacatttactaatatggatgttaggatgctttgggaggtgcttggtgttcttctgccaccaaacaggggtaaaaccttgga |
32783521 |
T |
|
| Q |
201 |
agatattaacattcagtttgtgtacgagcttcagtctagatcatttcttcaaaattttagagactttggtggtggtttttgttcatttgaattgcatgat |
300 |
Q |
| |
|
|| || || ||||||||| || | |||||| ||| ||||||||||||||| ||||| |||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
32783520 |
aggtactagcattcagttactgcaagagctttggtcaagatcatttcttcaagattttgtagactttggtggtggtatttgtacatttaaattgcatgat |
32783421 |
T |
|
| Q |
301 |
ttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtccttcatctgtcatttc |
400 |
Q |
| |
|
|| |||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32783420 |
ttagtgcatgatcttgcagtgtatgttgcaagagatgagtttcaattgattgaatttcataatgaaaatatactcgagaatgtccttcatctgtcattta |
32783321 |
T |
|
| Q |
401 |
ttaaaaatgatttgcttggcctaacgccggttcctactggcctgagaac |
449 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||||||||| |||||||| |
|
|
| T |
32783320 |
ttaaaaatgatttgcttggcgtaacaccagttcctactggtctgagaac |
32783272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 29750941 - 29751356
Alignment:
| Q |
1 |
atttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| ||||| || |||||||||| ||||||||| ||||||| |
|
|
| T |
29750941 |
atttggaatttaccacaaaaagaagatgatattttgcctgctctcaaattaagttttgatcaattaccctcatatttaaaacgatgttttgcctgcttct |
29751040 |
T |
|
| Q |
101 |
ctctctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggcacttggttttcttccgccaccaagtaggggtaaaaccttgga |
200 |
Q |
| |
|
| ||||||| ||| |||| | ||| ||||| | ||| | |||||| |||| ||| |||| ||||||||| |||||| | ||||||||||||||| |
|
|
| T |
29751041 |
ccctctttgtaaaagacttccactttagtaattattctgtcactgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttgga |
29751140 |
T |
|
| Q |
201 |
agatattaacattcagtttgtgtacgagcttcagtctagatcatttcttcaaaattttagagactttggtggtggtttttgttcatttgaattgcatgat |
300 |
Q |
| |
|
|||| | | ||| ||| || ||||||| || || ||||| || |||||| |||| | || |||| || ||||| |||| ||||||||||| |
|
|
| T |
29751141 |
agatgtcggtaatcaatttttgcacgagctacaatcaagatctttccttcaagatttctatgtctctggtaatg---tttgtgtatttaaattgcatgat |
29751237 |
T |
|
| Q |
301 |
ttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtccttcatctgtcatttc |
400 |
Q |
| |
|
|| |||||||||||| | | ||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| || ||| |||||||| |
|
|
| T |
29751238 |
ttagtgcatgatcttgccctatatgttgcaagagatgagtttcaattgctgaaattccataatgaaaatataattaagaatgttctccatttgtcattta |
29751337 |
T |
|
| Q |
401 |
ttaaaaatgatttgcttgg |
419 |
Q |
| |
|
|| ||||||||| ||||| |
|
|
| T |
29751338 |
ctacaaatgatttacttgg |
29751356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 29743908 - 29744323
Alignment:
| Q |
1 |
atttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttct |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| | |||||||||||| |||||| ||||| |||||||| |||| ||||||||| ||||||| |
|
|
| T |
29743908 |
atttggaatttaccacaaaaaaaagatgatattttgcctgctatcaaattaagttttgatcaattaccgtcttatttgaaacgatgttttgcctgcttct |
29744007 |
T |
|
| Q |
101 |
ctctctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggcacttggttttcttccgccaccaagtaggggtaaaaccttgga |
200 |
Q |
| |
|
| ||||||| ||| |||||| ||| |||| |||||| | |||||| |||| ||| |||| | |||| || |||||| | ||||||||||||||| |
|
|
| T |
29744008 |
ccctctttgtaaaagactttgtatttagtaataatcatgtcactgtgctttgggaggctcttgatcttctcccatcaccaaacaagggtaaaaccttgga |
29744107 |
T |
|
| Q |
201 |
agatattaacattcagtttgtgtacgagcttcagtctagatcatttcttcaaaattttagagactttggtggtggtttttgttcatttgaattgcatgat |
300 |
Q |
| |
|
|||| | || | | ||| || ||||||| || || ||||| || |||||| | || | ||||||| || |||| ||||| ||||||||||| |
|
|
| T |
29744108 |
agatgtcggcaattaatttttgcacgagctacaatcaagatctttccttcaagacttcgttgtctttggtaatg---cttgtgcatttaaattgcatgat |
29744204 |
T |
|
| Q |
301 |
ttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtccttcatctgtcatttc |
400 |
Q |
| |
|
|| |||||||||||| | | ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||| || ||| |||||||| |
|
|
| T |
29744205 |
ttagtgcatgatcttgccctatatgttgcaagagattagtttcaattgttaaaattccataatgaaaatataattgagaatgttctccatttgtcattta |
29744304 |
T |
|
| Q |
401 |
ttaaaaatgatttgcttgg |
419 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
29744305 |
ctacaaatgatttgcttgg |
29744323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 29602353 - 29601938
Alignment:
| Q |
1 |
atttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||| ||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
29602353 |
atttggaatttaccacaaaaagaagatgatattttgcctgctatcaaattaagttttgatcaattaccatcttatttaaaacgatgttttgcctgcttct |
29602254 |
T |
|
| Q |
101 |
ctctctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggcacttggttttcttccgccaccaagtaggggtaaaaccttgga |
200 |
Q |
| |
|
| ||||| ||||| |||| | ||| || || | ||| | |||||| |||| ||| |||| ||||||||| |||||| | ||||||||||||||| |
|
|
| T |
29602253 |
ccctcttcgaaaaagacttcaaatttgttacttatactgtcactgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttgga |
29602154 |
T |
|
| Q |
201 |
agatattaacattcagtttgtgtacgagcttcagtctagatcatttcttcaaaattttagagactttggtggtggtttttgttcatttgaattgcatgat |
300 |
Q |
| |
|
|||| | | ||| ||| || ||||||| || || ||||| || |||||| |||| | || |||| || ||||| |||| ||||||||||| |
|
|
| T |
29602153 |
agatgtcggtaatcaatttttgcacgagctacaatcaagatctttccttcaagatttctatgtctctggtaatg---tttgtgtatttaaattgcatgat |
29602057 |
T |
|
| Q |
301 |
ttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtccttcatctgtcatttc |
400 |
Q |
| |
|
|| |||||||||||| | | |||||||| |||||||||||||||||| ||||| | ||||||||||||||| ||||||| || ||| |||||||| |
|
|
| T |
29602056 |
ttagtgcatgatcttgccctatatgttgccagagatgagtttcaattgctgaaactccataatgaaaatataattaagaatgttctccatttgtcattta |
29601957 |
T |
|
| Q |
401 |
ttaaaaatgatttgcttgg |
419 |
Q |
| |
|
|| ||||||||| ||||| |
|
|
| T |
29601956 |
ctacaaatgatttacttgg |
29601938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 35933824 - 35933788
Alignment:
| Q |
295 |
catgatttggtgcatgatctttcattgtatgttgcaa |
331 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
35933824 |
catgatttggtgcacgatcttgcattgtatgttgcaa |
35933788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 35158059 - 35158171
Alignment:
| Q |
1 |
atttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttct |
100 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| || | ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35158059 |
atttggaatttaccgcaaaaagacgaggacattttaccagcaatcaaattaagttatgatcaattaccttcttatttaaaacagtgttttgcttgcttct |
35158158 |
T |
|
| Q |
101 |
ctctctttgaaaa |
113 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
35158159 |
ccctctttgaaaa |
35158171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 419
Target Start/End: Original strand, 35158345 - 35158474
Alignment:
| Q |
290 |
aattgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtccttca |
389 |
Q |
| |
|
||||||| ||| | |||||||| ||| ||||||||||| ||||||| ||||||||||||||||| | |||| ||| |||||| | || |||| | | || |
|
|
| T |
35158345 |
aattgcacgatctagtgcatgaccttgcattgtatgtttcaagagacgagtttcaattgttgaactcccatagtgacaatatatctgaaaatgccttaca |
35158444 |
T |
|
| Q |
390 |
tctgtcatttcttaaaaatgatttgcttgg |
419 |
Q |
| |
|
| |||||||| ||||||| ||||| |||| |
|
|
| T |
35158445 |
tttgtcatttactaaaaattatttgtttgg |
35158474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 18125008 - 18124974
Alignment:
| Q |
295 |
catgatttggtgcatgatctttcattgtatgttgc |
329 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18125008 |
catgatttggtacatgatctttcattgtatgttgc |
18124974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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